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BaseInfo

ncRNA ID novel_gma_miR7037
Species Glycine max
Class miRNA
Genome position Chr6:18621608-18621725 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 23
Mature sequence(if miRNA) 1 - GAAUCAAGUUGAUCCGUAAGACU - 23
Stem-loop(if miRNA) -- A                          GGAUCAACUUG           CCUG     C A
  G AUCAAGUUGAUCCGUAAGACUCAUAC           AUCCGUAUGAG    ACAGA C A
  | ||||||||||||||||||||||||||           |||||||||||    ||||| | G
  C UAGUUCAACUAGGCAUUCUGAGUAUG           UAGGUAUGCUC    UGUCU G U
UG C                          -----------           ACAA     A U
Stem-loop sequence GAAUCAAGUUGAUCCGUAAGACUCAUACGGAUCAACUUGAUCCGUAUGAGCCUGACAGACCAAGUUGAUCUGUAACACUCGUAUGGAUGUAUGAGUCUUACGGAUCAACUUGAUCCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600975.2
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  ||*||||||||||||||||||*|
targets:1247   AGCCUUACGGAUCAACUUGAUCC   1269

1.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  ***||||=|||||||||||||*|
targets:1047   CAACUUAUGGAUCAACUUGAUCC   1069

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_003547498.3
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  ***||||=|||||||||||||*|
targets:452   CAACUUAUGGAUCAACUUGAUCC   474

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006593444.2
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  ||-|*||||||||||*|||||||
targets:3673   AG-CAUACGGAUCAAGUUGAUUC   3694

2.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
XM_003518778.3
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  *||*|||=*|||||||||||||*
targets:2776   UGUAUUAUUGAUCAACUUGAUUA   2798

3.0 PREDICTED: Glycine max phosphate transporter PHO1 homolog 1-like (LOC100787164), mRNA phosphate transporter PHO1 homolog 1-like(LOC100787164) coding protein psRNATarget
XM_003516820.3
ncRNA:23   UCAGAAUGCCUAGUUGAACUAAG   1
  *||*|||=*|||||||||||||*
targets:2895   UGUAUUAUUGAUCAACUUGAUUA   2917

3.0 PREDICTED: Glycine max phosphate transporter PHO1 homolog 1-like (LOC100786083), mRNA phosphate transporter PHO1 homolog 1-like(LOC100786083) coding protein psRNATarget