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BaseInfo

ncRNA ID novel_gma_miR7033
Species Glycine max
Class miRNA
Genome position Chr17:4852742-4852809 [+]
Reference genome Glycine_max_v2.0
Source SRR1292928
Length 23
Mature sequence(if miRNA) 1 - AAAGAGAAGAAUGAGUGGAGCUC - 23
Stem-loop(if miRNA) -     GA          -  GCUC     UUUUA
 AAAGA  AGAAUGAGUG GA    AUAAA     G
 |||||  |||||||||| ||    |||||
 UUUUU  UUUUAUUUAU CU    UAUUU     C
A     GC          A  --AA     UCAAA
Stem-loop sequence AAAGAGAAGAAUGAGUGGAGCUCAUAAAUUUUAGCAAACUUUUAUAAUCAUAUUUAUUUUCGUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003554290.3
ncRNA:23   CUCGAGGUGAGUAAGAAGAGAAA   1
  **||||||=||||||||||=|||
targets:119   UUGCUCCAUUCAUUCUUCUUUUU   141

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100787392), mRNA ankyrin repeat-containing protein At5g02620-like(LOC100787392) coding protein psRNATarget
XM_003544480.3
ncRNA:23   CUCGAGGUGAGUAAGAAGAGAAA   1
  ****|||||||||||||=||||*
targets:1204   CCAAUCCACUCAUUCUUUUCUUG   1226

2.5 PREDICTED: Glycine max uncharacterized LOC100817041 (LOC100817041), mRNA uncharacterized LOC100817041(LOC100817041) coding protein psRNATarget
XM_003549416.3
ncRNA:23   CUCGAGGUGAGUAAGAAGAGAAA   1
  ***=||||=|||||||||||*||
targets:6   ACCUUCCAUUCAUUCUUCUCAUU   28

2.5 PREDICTED: Glycine max thaumatin-like protein 1b (LOC100785732), mRNA thaumatin-like protein 1b(LOC100785732) coding protein psRNATarget
XM_003545865.3
ncRNA:23   CUCGAGGUGAGUAAGAAGAGAAA   1
  ***=|||*||||||=||||||||
targets:109   UUUUUCCUCUCAUUUUUCUCUUU   131

2.5 PREDICTED: Glycine max uncharacterized LOC100787648 (LOC100787648), mRNA uncharacterized LOC100787648(LOC100787648) coding protein psRNATarget
XM_006598275.2
ncRNA:23   CUCGAGGUGAGUAAGAAGAGAAA   1
  **||||*=*||||||||||||||
targets:1227   CUGCUCAGAUCAUUCUUCUCUUU   1249

3.0 PREDICTED: Glycine max basic 7S globulin 2-like (LOC102663677), partial mRNA basic 7S globulin 2-like(LOC102663677) coding protein psRNATarget