Search result

BaseInfo

ncRNA ID novel_gma_miR7028
Species Glycine max
Class miRNA
Genome position Chr3:42649577-42649684 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606;SRR1451615
Length 24
Mature sequence(if miRNA) 85 - AUUAUAGAGACUAAAAAGAGCACU - 108
Stem-loop(if miRNA) --  A        A    -             -----     -   G  AC     A
  UG UCUUUUUA UCUU AUAGUUUAUAUUU     UAAUU AUA GG  UAAAA A
  || |||||||| |||| |||||||||||||     ||||| ||| ||  ||||| C
  AC AGAAAAAU AGAG UAUUAAAUGUAAA     AUUAG UAU UC  AUUUU A
UC  G        C    A             AAAAA     G   A  AA     C
Stem-loop sequence UGAUCUUUUUAAUCUUAUAGUUUAUAUUUUAAUUAUAGGGACUAAAAAACACUUUUAAACUAUAUGGAUUAAAAAAAAAUGUAAAUUAUAGAGACUAAAAAGAGCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577048.2
ncRNA:24   UCACGAGA-AAAAUCAGAGAUAUUA   1
  ****=|||-||||||||||||||||
targets:1946   UUAAUUCUCUUUUAGUCUCUAUAAU   1970

2.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget
XM_014773932.1
ncRNA:24   UCACGAGA-AAAAUCAGAGAUAUUA   1
  ****=|||-||||||||||||||||
targets:2056   UUAAUUCUCUUUUAGUCUCUAUAAU   2080

2.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget