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BaseInfo

ncRNA ID novel_gma_miR7005
Species Glycine max
Class miRNA
Genome position Chr16:26346760-26346931 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 24
Mature sequence(if miRNA) 1 - UUACGAAAUAACUGUCUUUGAAAG - 24
Stem-loop(if miRNA) --UUA  A                AG   UCUUCAUUU   -AUUC       A                         --A  UUUU
     CG AAUAACUGUCUUUGAA  GUU         GAC     AAAGACA UUAUUUCAUAAUAAUCGUCUUUGAA   GA    U
     || ||||||||||||||||  |||         |||     ||||||| |||||||||||||||||||||||||   ||
     GU UUAUUGGUAGAAACUU  CAG         UUG     UUUCUGU AAUAAAGUAUUAUUAGCAGAAACUU   CU    G
AUAAA  A                -A   UUUGCUUCU   GAAAA       C                         ACA  UUUG
Stem-loop sequence UUACGAAAUAACUGUCUUUGAAAGGUUUCUUCAUUUGACAUUCAAAGACAAUUAUUUCAUAAUAAUCGUCUUUGAAAGAUUUUUGGUUUUCACAUUCAAAGACGAUUAUUAUGAAAUAACUGUCUUUAAAAGGUUUCUUCGUUUGACAUUCAAAGAUGGUUAUUAUGAAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539896.3
ncRNA:24   GAAAGUUUCUGUCAAUAAAGCAUU   1
  *||*=||||=|||||||||=||||
targets:1962   GUUGUAAAGGCAGUUAUUUUGUAA   1985

2.5 PREDICTED: Glycine max transcription activator GLK1-like (LOC100777595), mRNA transcription activator GLK1-like(LOC100777595) coding protein psRNATarget
BT094625.1
ncRNA:24   GAAA--GUUUCUGUCAAUAAAGCAUU   1
  |*||--||*|||||||*|||||||||
targets:573   CGUUGCCAUAGACAGUAAUUUCGUAA   598

2.5 Soybean clone JCVI-FLGm-5H18 unknown mRNA NA coding protein psRNATarget