ncRNA ID | novel_gma_miR7005 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr16:26346760-26346931 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451606 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUACGAAAUAACUGUCUUUGAAAG - 24 |
Stem-loop(if miRNA) |
--UUA  A                AG   UCUUCAUUU   -AUUC       A                         --A  UUUU      CG AAUAACUGUCUUUGAA  GUU         GAC     AAAGACA UUAUUUCAUAAUAAUCGUCUUUGAA   GA    U      || ||||||||||||||||  |||         |||     ||||||| |||||||||||||||||||||||||   ||      GU UUAUUGGUAGAAACUU  CAG         UUG     UUUCUGU AAUAAAGUAUUAUUAGCAGAAACUU   CU    G AUAAA  A                -A   UUUGCUUCU   GAAAA       C                         ACA  UUUG |
Stem-loop sequence | UUACGAAAUAACUGUCUUUGAAAGGUUUCUUCAUUUGACAUUCAAAGACAAUUAUUUCAUAAUAAUCGUCUUUGAAAGAUUUUUGGUUUUCACAUUCAAAGACGAUUAUUAUGAAAUAACUGUCUUUAAAAGGUUUCUUCGUUUGACAUUCAAAGAUGGUUAUUAUGAAAUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003539896.3 |
|
2.5 | PREDICTED: Glycine max transcription activator GLK1-like (LOC100777595), mRNA | transcription activator GLK1-like(LOC100777595) | coding protein | psRNATarget | |||||||||
BT094625.1 |
|
2.5 | Soybean clone JCVI-FLGm-5H18 unknown mRNA | NA | coding protein | psRNATarget |