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BaseInfo

ncRNA ID novel_gma_miR6981
Species Glycine max
Class miRNA
Genome position Chr8:40647649-40647689 [-]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 19
Mature sequence(if miRNA) 1 - UUGCGGAUCAACUUGAUUU - 19
Stem-loop(if miRNA) --     C          UG
  AUCAA UUGAUCCGCA  C
  ||||| ||||||||||  U
  UAGUU AACUAGGCGU  U
UU     C          UC
Stem-loop sequence AUCAACUUGAUCCGCAUGCUUCUUGCGGAUCAACUUGAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:19   UUUAGUUCAACUAGGCGUU   1
  ==|||||||||||||||||
targets:55   GGAUCAAGUUGAUCCGCAA   73

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:19   UUUAGUUCAACUAGGCGUU   1
  ==|||||||||||||||||
targets:570   GGAUCAAGUUGAUCCGCAA   588

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:19   UUUAGUUCAACUAGGCGUU   1
  ==|||||||||||||||||
targets:650   GGAUCAAGUUGAUCCGCAA   668

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:19   UUUAGUUCAACUAGGCGUU   1
  =||||||||||||||*|||
targets:1163   GAAUCAAGUUGAUCCACAA   1181

2.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget