Search result

BaseInfo

ncRNA ID novel_gma_miR6977
Species Glycine max
Class miRNA
Genome position Chr19:22727662-22727732 [-]
Reference genome Glycine_max_v2.0
Source SRR1451605
Length 22
Mature sequence(if miRNA) 50 - UGAGUUCUUGAUUGUUGUAAUU - 71
Stem-loop(if miRNA) --      -  UG   GUU  AAUU   UUA    AA
  UGAGUU CU  AUU   GU    GAG   AGCU  U
  |||||| ||  |||   ||    |||   ||||  A
  ACUUAA GG  UGG   UA    CUU   UCGG  U
AC      C  GU   --U  -GAU   UUA    AA
Stem-loop sequence UGAGUUCUUGAUUGUUGUAAUUGAGUUAAGCUAAUAUAAGGCUAUUUUCUAGAUUGGUUGGGCAAUUCACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003533533.3
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  ||*|=|||||||||||*|||||
targets:33   AAGUGCAACAAUCAAGUACUCA   54

2.5 PREDICTED: Glycine max isoflavone 2'-hydroxylase-like (LOC100812102), mRNA isoflavone 2'-hydroxylase-like(LOC100812102) coding protein psRNATarget
XM_003533526.3
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  *=*|=|||||||||||*|||||
targets:77   UGGUGCAACAAUCAAGUACUCA   98

2.5 PREDICTED: Glycine max isoflavone 2'-hydroxylase-like (LOC100807819), mRNA isoflavone 2'-hydroxylase-like(LOC100807819) coding protein psRNATarget
XM_014772003.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1108   AGUUGGAGCAAUCAAGAACUCA   1129

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X6, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_014772001.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1162   AGUUGGAGCAAUCAAGAACUCA   1183

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X4, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_014772004.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1192   AGUUGGAGCAAUCAAGAACUCA   1213

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X8, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_014771999.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1215   AGUUGGAGCAAUCAAGAACUCA   1236

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X2, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_014772002.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1282   AGUUGGAGCAAUCAAGAACUCA   1303

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X5, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_006604492.2
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1161   AGUUGGAGCAAUCAAGAACUCA   1182

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X1, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_006604498.2
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1162   AGUUGGAGCAAUCAAGAACUCA   1183

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X7, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_014772000.1
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1335   AGUUGGAGCAAUCAAGAACUCA   1356

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100799542), transcript variant X3, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100799542) coding protein psRNATarget
XM_006576946.2
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1141   AGUUGGAGCAAUCAAGAACUCA   1162

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100810346), transcript variant X2, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100810346) coding protein psRNATarget
XM_003520596.3
ncRNA:22   UUAAUGUUGUUAGUUCUUGAGU   1
  |=||=*|=||||||||||||||
targets:1144   AGUUGGAGCAAUCAAGAACUCA   1165

3.0 PREDICTED: Glycine max interactor of constitutive active ROPs 2, chloroplastic-like (LOC100810346), transcript variant X1, mRNA interactor of constitutive active ROPs 2, chloroplastic-like(LOC100810346) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.