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BaseInfo

ncRNA ID novel_gma_miR6972
Species Glycine max
Class miRNA
Genome position Chr18:16140789-16140881 [-]
Reference genome Glycine_max_v2.0
Source SRR1451605;SRR1451611;SRR1451626
Length 21
Mature sequence(if miRNA) 1 - UUGAAGUGUUUGGAGGAACUC - 21
Stem-loop(if miRNA) --     C    C         ----AUUAU   UUUUCACUUUUGUC
  GUUCC CUAA CACUUCAAU         GGA              A
  ||||| |||| |||||||||         |||              G
  CAAGG GGUU GUGAAGUUA         AUC              A
CU     A    U         CCCCUCCUU   CUUAUCGAUCUCUA
Stem-loop sequence GUUCCCCUAACCACUUCAAUAUUAUGGAUUUUCACUUUUGUCAGAAUCUCUAGCUAUUCCUAUUCCUCCCCAUUGAAGUGUUUGGAGGAACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003531315.2
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||=*|||||||||||||
targets:145   GAGUUCUCCCAAACACUUCAA   165

2.0 PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100775538), mRNA sulfate transporter 2.1-like(LOC100775538) coding protein psRNATarget
XM_014770651.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||=*|||||||||||||
targets:215   AAGUUCUCCCAAACACUUCAA   235

2.0 PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100814993), mRNA sulfate transporter 2.1-like(LOC100814993) coding protein psRNATarget
XM_003552772.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||=*|||||||||||||
targets:108   AAGUUCUCCCAAACACUUCAA   128

2.0 PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100817831), mRNA sulfate transporter 2.1-like(LOC100817831) coding protein psRNATarget
XM_003538469.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||=*|||||||||||||
targets:148   AAGUUCUCCCAAACACUUCAA   168

2.0 PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100781327), mRNA sulfate transporter 2.1-like(LOC100781327) coding protein psRNATarget
XM_003526548.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||**|||||||||||||
targets:259   GAGUUCAACCAAACACUUCAA   279

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100805269), mRNA low affinity sulfate transporter 3-like(LOC100805269) coding protein psRNATarget
XM_014767214.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||**|||||||||||||
targets:515   AAGUUCACCCAAACACUUCAA   535

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X3, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_006596268.2
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||**|||||||||||||
targets:516   AAGUUCACCCAAACACUUCAA   536

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X2, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_006596269.2
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||**|||||||||||||
targets:519   AAGUUCACCCAAACACUUCAA   539

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X4, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_003544137.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||**|||||||||||||
targets:507   AAGUUCACCCAAACACUUCAA   527

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X1, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
NM_001248739.2
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||||||||||=|||||*
targets:332   GAGUUCCUCCAAACGCUUCAU   352

2.5 Glycine max ATP sulfurylase (LOC547634), mRNA ATP sulfurylase(LOC547634) coding protein psRNATarget
AF452454.2
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||||||||||=|||||*
targets:337   GAGUUCCUCCAAACGCUUCAU   357

2.5 Glycine max ATP sulfurylase mRNA, complete cds NA coding protein psRNATarget
AK245851.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||||||||||=|||||*
targets:494   GAGUUCCUCCAAACGCUUCAU   514

2.5 Glycine max cDNA, clone: GMFL01-43-F21 NA coding protein psRNATarget
AK287070.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||||||||||=|||||*
targets:507   GAGUUCCUCCAAACGCUUCAU   527

2.5 Glycine max cDNA, clone: GMFL01-43-G19 NA coding protein psRNATarget
XM_003556023.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  ||||||||||||||=|||||*
targets:506   GAGUUCCUCCAAACGCUUCAU   526

2.5 PREDICTED: Glycine max ATP sulfurylase 1, chloroplastic (LOC100817530), mRNA ATP sulfurylase 1, chloroplastic(LOC100817530) coding protein psRNATarget
XM_003551813.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|*|||||||||*||||||||
targets:1123   AAUUUCCUCCAACCACUUCAA   1143

2.5 PREDICTED: Glycine max leucine-rich repeat extensin-like protein 6 (LOC100778270), mRNA leucine-rich repeat extensin-like protein 6(LOC100778270) coding protein psRNATarget
XM_006575119.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *||*|==||||||||||||||
targets:230   AAGAUUUUCCAAACACUUCAA   250

3.0 PREDICTED: Glycine max homogentisate phytyltransferase VTE2-2 (VTE2-2), transcript variant X1, mRNA homogentisate phytyltransferase VTE2-2(VTE2-2) coding protein psRNATarget
NM_001250971.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *=|*|==||||||||||||||
targets:114   AGGAUUUUCCAAACACUUCAA   134

3.0 Glycine max homogentisate phytyltransferase VTE2-2 (VTE2-2), mRNA homogentisate phytyltransferase VTE2-2(VTE2-2) coding protein psRNATarget
DQ231061.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *=|*|==||||||||||||||
targets:114   AGGAUUUUCCAAACACUUCAA   134

3.0 Glycine max homogentisate phytyltransferase VTE2-2 (VTE2-2) mRNA, complete cds NA coding protein psRNATarget
XM_014761623.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *=|*|==||||||||||||||
targets:241   AGGAUUUUCCAAACACUUCAA   261

3.0 PREDICTED: Glycine max homogentisate solanesyltransferase, chloroplastic-like (LOC106794098), mRNA homogentisate solanesyltransferase, chloroplastic-like(LOC106794098) coding protein psRNATarget
AK286023.1
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *=|*|==||||||||||||||
targets:189   AGGAUUUUCCAAACACUUCAA   209

3.0 Glycine max cDNA, clone: GMFL01-20-H10 NA coding protein psRNATarget
XM_003543724.3
ncRNA:21   CUCAAGGAGGUUUGUGAAGUU   1
  *|||||**||||||||||||=
targets:330   AAGUUCACCCAAACACUUCAG   350

3.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100798723), mRNA low affinity sulfate transporter 3-like(LOC100798723) coding protein psRNATarget