Search result

BaseInfo

ncRNA ID	novel_gma_miR6969
Species	Glycine max
Class	miRNA
Genome position	Chr18:27676504-27676595 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451605;SRR1451606;SRR1451607;SRR1451609;SRR1451610;SRR1451621
Length	23
Mature sequence(if miRNA)	1 - UGACUUGGAACAUGAAUUUGCUC - 23
Stem-loop(if miRNA)	---G   A    -     AG       ---------      CAA      UU     AAA UUAU UUCCA  AGUCACA         ACUUUU   AUGGUU  U     ||| |||| |||||  |||||||         ||||||   ||||||  A     UUU AGUA AAGGU  UCAGUGU         UGGAAA   UACCGG  C CUCG   A    C     --       AUAUUUAUC      --C      UA
Stem-loop sequence	GAAAAUUAUUUCCAAGAGUCACAACUUUUCAAAUGGUUUUUACAUGGCCAUCAAAGGUCUAUUUAUAUGUGACUUGGAACAUGAAUUUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003541624.3	ncRNA:23   CUC---GUUUAAGUACAAGGUUCAGU   1   *||---|||||*|||||||||*|||| targets:311   CAGUCACAAAUCCAUGUUCCAUGUCA   336 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21065 (LOC100789899), mRNA	pentatricopeptide repeat-containing protein At4g21065(LOC100789899)	coding protein	psRNATarget
XM_014766385.1	ncRNA:23   CUCGUUUAAGUACAAGGUUCAGU   1   ||**||||||*|||||||||||* targets:1677   GAUGAAAUUCCUGUUCCAAGUCC   1699 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100789038 (LOC100789038), transcript variant X2, mRNA	uncharacterized LOC100789038(LOC100789038)	coding protein	psRNATarget
XM_006593812.2	ncRNA:23   CUCGUUUAAGUACAAGGUUCAGU   1   ||**||||||*|||||||||||* targets:1674   GAUGAAAUUCCUGUUCCAAGUCC   1696 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100789038 (LOC100789038), transcript variant X1, mRNA	uncharacterized LOC100789038(LOC100789038)	coding protein	psRNATarget
XM_014772466.1	ncRNA:23   CUCGUUUAAGUACAAGGUUCAGU   1   ||**||||||*|||||||||||* targets:1987   GAUGAAAUUCUUGUUCCAAGUCC   2009 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100808104 (LOC100808104), mRNA	uncharacterized LOC100808104(LOC100808104)	coding protein	psRNATarget