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BaseInfo

ncRNA ID	novel_gma_miR6960
Species	Glycine max
Class	miRNA
Genome position	Chr16:24253241-24253394 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451605;SRR1451619
Length	22
Mature sequence(if miRNA)	1 - AAAUUGACUUCUCUGUUGUCCU - 22
Stem-loop(if miRNA)	-AAA   A                  CU   CUA    G         ACU  GUUUGUGUUAAUAUUUAAUUUUGU     UUG CUUCUCUGUUGUCCUUUU  CAG   UCCC GUGUUGUCC   UA                        G     ||| ||||||||||||||||||  |||   |||| |||||||||   ||     GAC GAAGAGACGACGGGGAAA  GUC   AGGG CACGACGGG   AC                        A CCUG   C                  AG   AAC    G         -GA  UUUUAGUGUGUCAAAAUUUAACUU
Stem-loop sequence	AAAUUGACUUCUCUGUUGUCCUUUUCUCAGCUAUCCCGGUGUUGUCCACUUAGUUUGUGUUAAUAUUUAAUUUUGUGAUUCAAUUUAAAACUGUGUGAUUUUCAAGGGGCAGCACGGGGACAACUGGAAAAGGGGCAGCAGAGAAGCCAGGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006582346.2	ncRNA:22   UCCUGUUGUCUCUUCAGUUAAA   1   |**=||=||||||||||||||| targets:152   ACAGCAGCAGAGAAGUCAAUUU   173 Target Full Sequence	2.0	PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X2, mRNA	8-amino-7-oxononanoate synthase-like(LOC100776585)	coding protein	psRNATarget
XM_003527499.3	ncRNA:22   UCCUGUUGUCUCUUCAGUUAAA   1   |**=||=||||||||||||||| targets:150   ACAGCAGCAGAGAAGUCAAUUU   171 Target Full Sequence	2.0	PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X1, mRNA	8-amino-7-oxononanoate synthase-like(LOC100776585)	coding protein	psRNATarget
XM_006582347.2	ncRNA:22   UCCUGUUGUCUCUUCAGUUAAA   1   |**=||=||||||||||||||| targets:153   ACAGCAGCAGAGAAGUCAAUUU   174 Target Full Sequence	2.0	PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X3, mRNA	8-amino-7-oxononanoate synthase-like(LOC100776585)	coding protein	psRNATarget
XM_006598182.2	ncRNA:22   UCCUGUUGUCUCUUCAGUUAAA   1   |||||||=|*|||||||||||| targets:22   AGGACAAUAAAGAAGUCAAUUU   43 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102660381 (LOC102660381), mRNA	uncharacterized LOC102660381(LOC102660381)	coding protein	psRNATarget
XM_006579533.2	ncRNA:22   UCCUGUUGUCUCUUCAGUUAAA   1   *|*|=|||||||||||=||||| targets:721   CGAAUAACAGAGAAGUUAAUUU   742 Target Full Sequence	2.5	PREDICTED: Glycine max putative calcium-binding protein CML19 (LOC100798531), mRNA	putative calcium-binding protein CML19(LOC100798531)	coding protein	psRNATarget
XM_014766322.1	ncRNA:22   UC-CUGU---UGUCUCUUCAGUUAAA   1   ||-||||---|||||||||||||||| targets:160   AGAGACAGUAACAGAGAAGUCAAUUU   185 Target Full Sequence	3.0	PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC106795661), mRNA	8-amino-7-oxononanoate synthase-like(LOC106795661)	coding protein	psRNATarget