Search result

BaseInfo

ncRNA ID	novel_gma_miR6958
Species	Glycine max
Class	miRNA
Genome position	Chr10:24869607-24869701 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451605
Length	22
Mature sequence(if miRNA)	1 - UACCAACUCAAUAUCUUUCGUU - 22
Stem-loop(if miRNA)	--     A             G     C     A         C      UACCA CUCAAUAUCUUUC UUUCA CUUUU UUUUGUAAA UACA   ||||| ||||||||||||| ||||| ||||| ||||||||| |||C   AUGGU GAGUUAUAGAAAG AAAGU GAAAA AAAACAUUU AUGU AG     C             G     U     C         A
Stem-loop sequence	UACCAACUCAAUAUCUUUCGUUUCACCUUUUAUUUUGUAAACUACACUGUAAUUUACAAAACAAAAGUUGAAAGGAAAGAUAUUGAGCUGGUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006591670.1	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ||*|||||||||||||*||||| targets:48   AAGGAAAGAUAUUGAGCUGGUA   69 Target Full Sequence	1.5	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_006604763.2	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||||||*||||||||||| targets:589   GGAGAAAGAUCUUGAGUUGGUA   610 Target Full Sequence	1.5	PREDICTED: Glycine max mevalonate kinase-like (LOC100810739), transcript variant X2, mRNA	mevalonate kinase-like(LOC100810739)	coding protein	psRNATarget
XM_006604762.2	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||||||*||||||||||| targets:648   GGAGAAAGAUCUUGAGUUGGUA   669 Target Full Sequence	1.5	PREDICTED: Glycine max mevalonate kinase-like (LOC100810739), transcript variant X1, mRNA	mevalonate kinase-like(LOC100810739)	coding protein	psRNATarget
NM_001289288.1	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||=|||*||||||||||| targets:547   GGAGAAGGAUCUUGAGUUGGUA   568 Target Full Sequence	2.5	Glycine max mevalonate kinase-like (LOC100820343), mRNA	mevalonate kinase-like(LOC100820343)	coding protein	psRNATarget
BT094141.1	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||=|||*||||||||||| targets:549   GGAGAAGGAUCUUGAGUUGGUA   570 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-18A16 unknown mRNA	NA	coding protein	psRNATarget
AK286621.1	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||=|||*||||||||||| targets:632   GGAGAAGGAUCUUGAGUUGGUA   653 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-32-M18	NA	coding protein	psRNATarget
XM_006577186.2	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ==*|||=|||*||||||||||| targets:653   GGAGAAGGAUCUUGAGUUGGUA   674 Target Full Sequence	2.5	PREDICTED: Glycine max mevalonate kinase-like (LOC100820343), transcript variant X1, mRNA	mevalonate kinase-like(LOC100820343)	coding protein	psRNATarget
XM_006581924.2	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ||-||||*|||||||||||*|| targets:1285   AA-GAAAAAUAUUGAGUUGCUA   1305 Target Full Sequence	2.5	PREDICTED: Glycine max DNA-directed RNA polymerases II, IV and V subunit 11-like (LOC100804393), transcript variant X2, mRNA	DNA-directed RNA polymerases II, IV and V subunit 11-like(LOC100804393)	coding protein	psRNATarget
XM_014776579.1	ncRNA:22   UUGCUUUCUAUAACUCAACCAU   1   ||-||||*|||||||||||*|| targets:1369   AA-GAAAAAUAUUGAGUUGCUA   1389 Target Full Sequence	2.5	PREDICTED: Glycine max DNA-directed RNA polymerases II, IV and V subunit 11-like (LOC100804393), transcript variant X1, mRNA	DNA-directed RNA polymerases II, IV and V subunit 11-like(LOC100804393)	coding protein	psRNATarget