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BaseInfo

ncRNA ID novel_gma_miR6943
Species Glycine max
Class miRNA
Genome position Chr1:17491021-17491153 [+]
Reference genome Glycine_max_v2.0
Source SRR1451605
Length 22
Mature sequence(if miRNA) 1 - UUUAGUCCCUGAAGUUUACAUU - 22
Stem-loop(if miRNA) --                  C     A    -CC        AC          UU          C
  UUUAGUCCCUGAAGUUUA AUUUU AUUC   AAAAGGUU  UGCCAUUAAA  UUUUUUAACU C
  |||||||||||||||||| ||||| ||||   ||||||||  ||||||||||  |||||||||| G
  AAAUCAGGGAUUUUAAAU UAAAA UAAG   UUUUCUAA  ACGGUAAUUU  AAGAAAUUGA U
AA                  A     A    AUU        AA          -U          U
Stem-loop sequence UUUAGUCCCUGAAGUUUACAUUUUAAUUCCCAAAAGGUUACUGCCAUUAAAUUUUUUUUAACUCCGUUAGUUAAAGAAUUUUAAUGGCAAAAAUCUUUUUUAGAAUAAAAAUAUAAAUUUUAGGGACUAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003533666.3
ncRNA:22   UU--AC-AUUUGAAGUCCCUGAUUU   1
  ||--||-||||=|||||||||||||
targets:2256   AACUUGAUAAAUUUCAGGGACUAAA   2280

3.0 PREDICTED: Glycine max uncharacterized LOC100803921 (LOC100803921), transcript variant X3, mRNA uncharacterized LOC100803921(LOC100803921) coding protein psRNATarget