ncRNA ID | novel_gma_miR6896 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr8:10859605-10859718 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451605 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UGGACUAAAUAUAGAUAUGCU - 21 |
Stem-loop(if miRNA) |
--U   C            UGCUUUU     ---     UAAAUA      U      UGUAA    GGA UAAAUAUAGAUA       AAUAC   UAACA      UAUUCA GUGCAU     A    ||| ||||||||||||       |||||   |||||      |||||| ||||||     A    CUU GUUUAUAUUUGU       UUAUG   AUUGU      GUAAGU CAUGUA     A UCG   U            -----CU     UUU     ----UC      -      UAAAA |
Stem-loop sequence | UGGACUAAAUAUAGAUAUGCUUUUAAUACUAACAUAAAUAUAUUCAUGUGCAUUGUAAAAAAAAAUAUGUACUGAAUGCUUGUUAUUUGUAUUUCUGUUUAUAUUUGUUUCGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003551923.3 |
|
2.0 | PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2 (LOC100798816), transcript variant X2, mRNA | E3 ubiquitin-protein ligase RGLG2(LOC100798816) | coding protein | psRNATarget | |||||||||
XM_006601859.2 |
|
2.0 | PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2 (LOC100798816), transcript variant X1, mRNA | E3 ubiquitin-protein ligase RGLG2(LOC100798816) | coding protein | psRNATarget | |||||||||
XM_006601860.2 |
|
2.0 | PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2 (LOC100798816), transcript variant X3, mRNA | E3 ubiquitin-protein ligase RGLG2(LOC100798816) | coding protein | psRNATarget |