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BaseInfo

ncRNA ID	novel_gma_miR6872
Species	Glycine max
Class	miRNA
Genome position	Chr5:39506599-39506766 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451605
Length	20
Mature sequence(if miRNA)	149 - AGAGCUUUCUUCAGUCCACU - 168
Stem-loop(if miRNA)	--A     UU          CUC     U   AG            A -  G   AC       UC  AA           AGCG    GAGCU  CUUCAGUCCA   AUGGG GAC  UAAGAUUCAAUU G CU CCG  UCAUUCA  CA  UGUUGAGUGUA    A    |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||  |||||||||||    CUCGA  GAAGUCAGGU   UGUCC UUG  AUUCUAAGUUAA C GA GGC  AGUAAGU  GU  ACGACUCAUAU    A UCC     GG          UCA     U   -A            A A  G   GU       GA  AG           AAAU
Stem-loop sequence	AGAGCUUUCUUCAGUCCACUCAUGGGUGACAGUAAGAUUCAAUUAGCUGCCGACUCAUUCAUCCAAAUGUUGAGUGUAAGCGAAUAAAUAUACUCAGCAGAUGAGUGAAUGAUGCGGGAGACAAAUUGAAUCUUAAGUUUCCUGUACUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003519358.3	ncRNA:20   UCACCUGACUUCUUUCGAGA   1   =|||*=|||||||||||||| targets:717   GGUGUGCUGAAGAAAGCUCU   736 Target Full Sequence	2.0	PREDICTED: Glycine max indole-3-glycerol phosphate synthase, chloroplastic-like (LOC100790882), mRNA	indole-3-glycerol phosphate synthase, chloroplastic-like(LOC100790882)	coding protein	psRNATarget
XM_003549258.3	ncRNA:20   UCACCUGACUUCUUUCGAGA   1   *|||||*|||*||||||||| targets:2345   UGUGGAAUGAUGAAAGCUCU   2364 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816713 (LOC100816713), transcript variant X3, mRNA	uncharacterized LOC100816713(LOC100816713)	coding protein	psRNATarget
XM_006601107.2	ncRNA:20   UCACCUGACUUCUUUCGAGA   1   *|||||*|||*||||||||| targets:2341   UGUGGAAUGAUGAAAGCUCU   2360 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816713 (LOC100816713), transcript variant X2, mRNA	uncharacterized LOC100816713(LOC100816713)	coding protein	psRNATarget
XM_006601106.2	ncRNA:20   UCACCUGACUUCUUUCGAGA   1   *|||||*|||*||||||||| targets:2346   UGUGGAAUGAUGAAAGCUCU   2365 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816713 (LOC100816713), transcript variant X1, mRNA	uncharacterized LOC100816713(LOC100816713)	coding protein	psRNATarget