Search result

BaseInfo

ncRNA ID	novel_gma_miR6870
Species	Glycine max
Class	miRNA
Genome position	Chr4:5775656-5775778 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451605
Length	20
Mature sequence(if miRNA)	104 - UCAACUAAGAAUUCAACAAA - 123
Stem-loop(if miRNA)	--UA   U     G                      AC     CG   UA  UUUU     GU     UUG GUUCU GGUUGAGAAUCACAACAGAAUU  AUUUU  UUG  GU    GUUUU  U     ||| ||||| ||||||||||||||||||||||  |||||  |||  ||    |||||  U     AAC UAAGA UCAACUUUUAGUGUUGUUUUAG  UGAAG  AAC  CA    CAAAA  U AAAC   U     A                      CA     AU   GC  ----     GG
Stem-loop sequence	UAUUGUGUUCUGGGUUGAGAAUCACAACAGAAUUACAUUUUCGUUGUAGUUUUUGUUUUGUUUUGGAAAACACCGCAAUAGAAGUACGAUUUUGUUGUGAUUUUCAACUAAGAAUUCAACAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003538247.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|||||||=||||||||||| targets:2121   CUUGUUGAGUUCUUAGUUGA   2140 Target Full Sequence	1.5	PREDICTED: Glycine max internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like (LOC100793544), mRNA	internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like(LOC100793544)	coding protein	psRNATarget
XM_003535190.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|||||||||||||||||*| targets:15   CUUGUUGAAUUCUUAGUUCA   34 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100809455 (LOC100809455), mRNA	uncharacterized LOC100809455(LOC100809455)	coding protein	psRNATarget
XM_003542531.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|||||||||||||||||*| targets:197   CUUGUUGAAUUCUUAGUUCA   216 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100779070 (LOC100779070), mRNA	uncharacterized LOC100779070(LOC100779070)	coding protein	psRNATarget
XM_003523160.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*|*||||||||||||||| targets:520   CUAGAUGAAUUCUUAGUUGA   539 Target Full Sequence	2.0	PREDICTED: Glycine max small nuclear ribonucleoprotein E (LOC100816107), mRNA	small nuclear ribonucleoprotein E(LOC100816107)	coding protein	psRNATarget
AK287194.1	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*|*||||||||||||||| targets:512   CUAGAUGAAUUCUUAGUUGA   531 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-46-E11	NA	coding protein	psRNATarget
XM_003544043.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   ||||*|||||||||*||||| targets:1284   UUUGCUGAAUUCUUUGUUGA   1303 Target Full Sequence	2.5	PREDICTED: Glycine max plastid division protein PDV1-like (LOC100802631), mRNA	plastid division protein PDV1-like(LOC100802631)	coding protein	psRNATarget
XM_006576978.2	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*||||||||||*|||||| targets:138   GUAGUUGAAUUCUAAGUUGA   157 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g50808-like (LOC100803076), transcript variant X3, mRNA	uncharacterized protein At3g50808-like(LOC100803076)	coding protein	psRNATarget
XM_014773888.1	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*||||||||||*|||||| targets:138   GUAGUUGAAUUCUAAGUUGA   157 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g50808-like (LOC100803076), transcript variant X2, mRNA	uncharacterized protein At3g50808-like(LOC100803076)	coding protein	psRNATarget
XM_006604537.2	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*||||||||||*|||||| targets:163   GUAGUUGAAUUCUAAGUUGA   182 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100803083 (LOC100803083), transcript variant X2, mRNA	uncharacterized LOC100803083(LOC100803083)	coding protein	psRNATarget
XM_014773887.1	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*||||||||||*|||||| targets:136   GUAGUUGAAUUCUAAGUUGA   155 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g50808-like (LOC100803076), transcript variant X1, mRNA	uncharacterized protein At3g50808-like(LOC100803076)	coding protein	psRNATarget
XM_003553521.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|*||||||||||*|||||| targets:162   GUAGUUGAAUUCUAAGUUGA   181 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100803083 (LOC100803083), transcript variant X1, mRNA	uncharacterized LOC100803083(LOC100803083)	coding protein	psRNATarget
XM_003538074.3	ncRNA:20   AAACAACUUAAGAAUCAACU   1   *|||||*||*|||||||||| targets:2841   GUUGUUUAAGUCUUAGUUGA   2860 Target Full Sequence	2.5	PREDICTED: Glycine max poly [ADP-ribose] polymerase 3-like (LOC100788978), mRNA	poly [ADP-ribose] polymerase 3-like(LOC100788978)	coding protein	psRNATarget