Search result

BaseInfo

ncRNA ID novel_gma_miR6868
Species Glycine max
Class miRNA
Genome position Chr4:20559654-20559797 [+]
Reference genome Glycine_max_v2.0
Source SRR1451605
Length 24
Mature sequence(if miRNA) 121 - AACAUCGGUUUUCUGUAAAAAAAC - 144
Stem-loop(if miRNA) ---        AA      A          AACU               G     AU          GAA   G U
   UUUUUACA  AAAACC AUGUUAACGU    UAACAUCGAUUUUUU GAAAA  CGAUGUUAGC   UGU U A
   ||||||||  |||||| ||||||||||    ||||||||||||||| |||||  ||||||||||   ||| | A
   AAAAAUGU  UUUUGG UACAAUUGCA    AUUGUAGCUAAAAAA UUUUU  GUUACAAUUG   ACA G U
CAA        -C      C          ----               G     GG          ---   G U
Stem-loop sequence UUUUUACAAAAAAACCAAUGUUAACGUAACUUAACAUCGAUUUUUUGGAAAAAUCGAUGUUAGCGAAUGUGUUAAUUGGACAGUUAACAUUGGGUUUUUGAAAAAAUCGAUGUUAACGUUAACAUCGGUUUUCUGUAAAAAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588840.2
ncRNA:24   CAAAAAAAUGUCUUUUGGCUACAA   1
  |*|||*|||=*|||||||||||||
targets:29   GGUUUCUUAUUGAAAACCGAUGUU   52

3.0 PREDICTED: Glycine max actin-related protein 7-like (LOC100803056), transcript variant X1, mRNA actin-related protein 7-like(LOC100803056) coding protein psRNATarget