Search result

BaseInfo

ncRNA ID novel_gma_miR6859
Species Glycine max
Class miRNA
Genome position Chr3:6221593-6221727 [-]
Reference genome Glycine_max_v2.0
Source SRR1451605
Length 20
Mature sequence(if miRNA) 116 - UUUUUACGACGGUUAUACAC - 135
Stem-loop(if miRNA) --                ACACAC    A          UUAUAGAUAUACAA      C          ACG
  UUUUUACGACGGUUAU      AACC UCUUAGAAAG              ACUAUA UAAGACGGUU   G
  ||||||||||||||||      |||| ||||||||||              |||||| ||||||||||
  GAAGAUGCUGCCAAUA      UUGG AGAAUCUUUC              UGAUAU AUUCUGCCAA   A
UG                CACAAA    C          -----------UAC      A          AAA
Stem-loop sequence UUUUUACGACGGUUAUACACACAACCAUCUUAGAAAGUUAUAGAUAUACAAACUAUACUAAGACGGUUACGGAAAAAACCGUCUUAAUAUAGUCAUCUUUCUAAGACGGUUAAACACAUAACCGUCGUAGAAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773514.1
ncRNA:20   CACAUAUUGGCAGCAUUUUU   1
  ||||||||||||||||||||
targets:2093   GUGUAUAACCGUCGUAAAAA   2112

0.0 PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA uncharacterized LOC106798042(LOC106798042) coding protein psRNATarget
XM_014773514.1
ncRNA:20   CACAUAUUGGCAGCAUUUUU   1
  **||||||||||||||=|||
targets:2189   ACGUAUAACCGUCGUAGAAA   2208

2.5 PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA uncharacterized LOC106798042(LOC106798042) coding protein psRNATarget