| ncRNA ID | ath-miR173-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:8236153-8236254 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 9 - UUCGCUUGCAGAGAGAAAUCAC - 30 |
| Stem-loop(if miRNA) |
A G A U UCAAAAAAG U U UAAGU CUUUCGCUUGCA AGAGAA UCACAG GG UUG AG U ||||| |||||||||||| |||||| |||||| || ||| || GUUCG GAAAGCGAAUGU UCUCUU AGUGUC CC AAU UC U A G - U UUUCUCUGA - U |
| Stem-loop sequence | UAAGUACUUUCGCUUGCAGAGAGAAAUCACAGUGGUCAAAAAAGUUGUAGUUUUCUUAAAGUCUCUUUCCUCUGUGAUUCUCUGUGUAAGCGAAAGAGCUUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001084839.2 |
|
2.5 | Arabidopsis thaliana Phosphatidic acid phosphatase (PAP2) family protein (SPP1), mRNA | Phosphatidic acid phosphatase (PAP2) family protein(SPP1) | coding protein | psRNATarget | |||||||||
| AK227239.1 |
|
2.5 | Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-C15 | NA | coding protein | psRNATarget | |||||||||
| NM_115711.4 |
|
2.5 | Arabidopsis thaliana Phosphatidic acid phosphatase (PAP2) family protein (SPP1), mRNA | Phosphatidic acid phosphatase (PAP2) family protein(SPP1) | coding protein | psRNATarget |
| 1 | PMID:12225663
"CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana"; Park W, Li J, Song R, Messing J, Chen X; Curr Biol. 12:1484-1495(2002). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |
| 6 | PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012). |