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BaseInfo

ncRNA ID novel_gma_miR6847
Species Glycine max
Class miRNA
Genome position Chr1:5792918-5792974 [-]
Reference genome Glycine_max_v2.0
Source SRR1292928
Length 24
Mature sequence(if miRNA) 1 - GGGAGAUAGAUAGGUAAGAUAGAC - 24
Stem-loop(if miRNA) ---C  G         GA      G    G
    AU UUAUCUAUU  GUCUUU CAAA A
    || |||||||||  |||||| ||||
    UA AAUGGAUAG  UAGAGG GUUU C
CAGA  G         -A      -    A
Stem-loop sequence CAUGUUAUCUAUUGAGUCUUUGCAAAGACAUUUGGGAGAUAGAUAGGUAAGAUAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245966.1
ncRNA:24   CAGAUAGA-AUGGAUAGAUAGAGGG   1
  ***|||||-||=|||||||||||||
targets:44   AAAUAUCUGUAUCUAUCUAUCUCCC   68

3.0 Glycine max cDNA, clone: GMFL01-47-H12 NA coding protein psRNATarget
XM_003536307.2
ncRNA:24   CAGAUAGA-AUGGAUAGAUAGAGGG   1
  ***|||||-||=|||||||||||||
targets:116   AAAUAUCUGUAUCUAUCUAUCUCCC   140

3.0 PREDICTED: Glycine max caffeoylshikimate esterase-like (LOC100818192), mRNA caffeoylshikimate esterase-like(LOC100818192) coding protein psRNATarget