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BaseInfo

ncRNA ID novel_gma_miR6802
Species Glycine max
Class miRNA
Genome position Chr1:42563979-42564111 [+]
Reference genome Glycine_max_v2.0
Source SRR1451604
Length 22
Mature sequence(if miRNA) 112 - AGAGGAGGAAGAAGCACAGAUU - 133
Stem-loop(if miRNA) --  C    C                   C          G   -C  C    C         C   
  UC GUGC UCUUCCUCCUCUACCAGCU AAUAUCUUUC UUU  AC UUUG UUUUGUAAA UACA
  || |||| ||||||||||||||||||| |||||||||| |||  || |||| ||||||||| |||U
  AG CACG AGAAGGAGGAGAUGGUCGA UUAUAGAAAG AAA  UG AAAC AAAACAUUU AUGU
UU  A    A                   A          G   UU  A    -         A   
Stem-loop sequence UCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCGUUUCACCUUUGCUUUUGUAAACUACAUUGUAAUUUACAAAACAAAAGUUUAAAGGAAAGAUAUUAAGCUGGUAGAGGAGGAAGAAGCACAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006580881.2
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||||
targets:2151   AAACUAUGCUUCUUCCUCCUCU   2172

1.0 PREDICTED: Glycine max disease resistance-like protein (LOC100500528), transcript variant X2, mRNA disease resistance-like protein(LOC100500528) coding protein psRNATarget
XM_006580882.2
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||||
targets:2156   AAACUAUGCUUCUUCCUCCUCU   2177

1.0 PREDICTED: Glycine max disease resistance-like protein (LOC100500528), transcript variant X8, mRNA disease resistance-like protein(LOC100500528) coding protein psRNATarget
XM_014776759.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:2625   AAACUAUGCUUCUUCCUCCUUU   2646

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785853), transcript variant X1, mRNA TMV resistance protein N-like(LOC100785853) coding protein psRNATarget
XM_006582180.2
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:2607   AAACUAUGCUUCUUCCUCCUUU   2628

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785853), transcript variant X5, mRNA TMV resistance protein N-like(LOC100785853) coding protein psRNATarget
XM_014776761.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:2625   AAACUAUGCUUCUUCCUCCUUU   2646

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785853), transcript variant X3, mRNA TMV resistance protein N-like(LOC100785853) coding protein psRNATarget
XM_014776760.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:2625   AAACUAUGCUUCUUCCUCCUUU   2646

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785853), transcript variant X2, mRNA TMV resistance protein N-like(LOC100785853) coding protein psRNATarget
XM_014776762.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:2625   AAACUAUGCUUCUUCCUCCUUU   2646

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785853), transcript variant X4, mRNA TMV resistance protein N-like(LOC100785853) coding protein psRNATarget
XM_014776765.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:530   AAACUAUGCUUCUUCCUCCUUU   551

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100785316), mRNA TMV resistance protein N-like(LOC100785316) coding protein psRNATarget
XM_014761704.1
ncRNA:22   UUAGACACGAAGAAGGAGGAGA   1
  ||*||*||||||||||||||=|
targets:225   AAACUAUGCUUCUUCCUCCUUU   246

2.5 PREDICTED: Glycine max toll/interleukin-1 receptor-like protein (LOC102669340), mRNA toll/interleukin-1 receptor-like protein(LOC102669340) coding protein psRNATarget
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