Search result

BaseInfo

ncRNA ID	novel_gma_miR6788
Species	Glycine max
Class	miRNA
Genome position	Chr12:38294324-38294460 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451604;SRR1292928
Length	24
Mature sequence(if miRNA)	114 - CGAAGAGAUAAUGUAGCCUAUGAC - 137
Stem-loop(if miRNA)	-UAU   U    U      ---AUU   AGUUCAUGAUGUAGUUCGCUACAACAAAGAGAUAAUGUAGU     UAG UUAU UUAUUU      GUG                                         C     ||| |||| ||||||      |||                                         U     AUC GAUG AAUAGA      ACA                                         A CAGU   C    U      GAAGCA   UCGUUUGUGGUUUAUAUUUAUAUGAUACUCAUUAACUGAGU
Stem-loop sequence	UAUUAGUUUAUUUUAUUUAUUGUGAGUUCAUGAUGUAGUUCGCUACAACAAAGAGAUAAUGUAGUCUAUGAGUCAAUUACUCAUAGUAUAUUUAUAUUUGGUGUUUGCUACAACGAAGAGAUAAUGUAGCCUAUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006584586.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|=|||||=||||||||||||||| targets:1844   CUUAUAGGUUACAUUAUCUCUUCG   1867 Target Full Sequence	1.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X2, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584586.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *||||||*|||||||||||||||| targets:1908   CUCAUAGACUACAUUAUCUCUUCG   1931 Target Full Sequence	1.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X2, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584585.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|=|||||=||||||||||||||| targets:1853   CUUAUAGGUUACAUUAUCUCUUCG   1876 Target Full Sequence	1.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X1, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584585.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *||||||*|||||||||||||||| targets:1917   CUCAUAGACUACAUUAUCUCUUCG   1940 Target Full Sequence	1.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X1, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584586.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|||||||||||||||||||||=| targets:1972   CUCAUAGGCUACAUUAUCUCUUUG   1995 Target Full Sequence	1.5	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X2, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584585.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|||||||||||||||||||||=| targets:1981   CUCAUAGGCUACAUUAUCUCUUUG   2004 Target Full Sequence	1.5	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X1, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584586.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|||||**|||||||||||||||| targets:1780   CUCAUAAACUACAUUAUCUCUUCG   1803 Target Full Sequence	2.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X2, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget
XM_006584585.2	ncRNA:24   CAGUAUCCGAUGUAAUAGAGAAGC   1   *|||||**|||||||||||||||| targets:1789   CUCAUAAACUACAUUAUCUCUUCG   1812 Target Full Sequence	2.0	PREDICTED: Glycine max protein trichome birefringence-like 16 (LOC102666240), transcript variant X1, mRNA	protein trichome birefringence-like 16(LOC102666240)	coding protein	psRNATarget