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BaseInfo

ncRNA ID	novel_gma_miR6772
Species	Glycine max
Class	miRNA
Genome position	Chr5:12224853-12225066 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451604
Length	24
Mature sequence(if miRNA)	1 - AUGUAGUUCUUUGUGUAUAACAUU - 24
Stem-loop(if miRNA)	--     A      U    A   G    AA       C    G  G                   C  U              ---     UAGU    A         C   UGUUA AUACAA GAAC ACA CAAA  AAGUGUA GCAU AU AACGUUGACAUCGGUUUUC AG AAAACCGAUGUUAA   UAUGU    UUAA AUCGGUUUU U   ||||| |||||| |||| ||| ||||  ||||||| |||| || ||||||||||||||||||| || ||||||||||||||   |||||    |||| ||||||||| A   ACAAU UGUGUU CUUG UGU GUUU  UUCACAU CGUA UA UUGCAACUGUAGCCAAAAG UC UUUUGGCUACAAUU   GUAUA    AAUU UAGCCAAAA G UU     A      U    A   A    -A       A    G  G                   A  U              CCC     ---U    G         A
Stem-loop sequence	UGUUAAAUACAAUGAACAACAGCAAAAAAAGUGUACGCAUGAUGAACGUUGACAUCGGUUUUCCAGUAAAACCGAUGUUAAUAUGUUAGUUUAAAAUCGGUUUUCUAGAAAAACCGAUGUUAAUAUAUGCCCUUAACAUCGGUUUUUCUAGAAAACCGAUGUCAACGUUGAUGAUGCAUACACUUAUUUGAUGUAGUUCUUUGUGUAUAACAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JQ929619.1	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:373   GGUGCGUUUUACAUAAAGAACUACAU   398 Target Full Sequence	2.5	Glycine max cultivar Pusa 16 lipoxygenase-2 mRNA, complete cds	NA	coding protein	psRNATarget
J03211.1	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:454   GGUGCGUUUUACAUAAAGAACUACAU   479 Target Full Sequence	2.5	Soybean lipoxygenase-2 mRNA, complete cds	NA	coding protein	psRNATarget
J02795.1	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:369   GGUGCGUUUUACAUAAAGAACUACAU   394 Target Full Sequence	2.5	Soybean lipoxygenase-1 mRNA	NA	coding protein	psRNATarget
X67304.1	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:369   GGUGCGUUUUACAUAAAGAACUACAU   394 Target Full Sequence	2.5	G.max mRNA for lipoxygenase 1	NA	coding protein	psRNATarget
D13949.1	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:428   GGUGCGUUUUACAUAAAGAACUACAU   453 Target Full Sequence	2.5	Glycine max lox2 mRNA for lipoxygenase-2, complete cds	NA	coding protein	psRNATarget
NM_001250756.2	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:462   GGUGCGUUUUACAUAAAGAACUACAU   487 Target Full Sequence	2.5	Glycine max lipoxygenase-2 (LOX2), mRNA	lipoxygenase-2(LOX2)	coding protein	psRNATarget
NM_001249224.2	ncRNA:24   UUAC--AAUAUGUGUUUCUUGAUGUA   1   ==||--||*||||=|||||||||||| targets:377   GGUGCGUUUUACAUAAAGAACUACAU   402 Target Full Sequence	2.5	Glycine max lipoxygenase (LOX1.1), mRNA	lipoxygenase(LOX1.1)	coding protein	psRNATarget
XM_006573265.2	ncRNA:24   UUACAAUAUGUGUUUCUUGAUGUA   1   *=|||*||=*|||||||||||||| targets:573   UGUGUGAUGAACAAAGAACUACAU   596 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100815839 (LOC100815839), transcript variant X2, mRNA	uncharacterized LOC100815839(LOC100815839)	coding protein	psRNATarget
XM_003516875.3	ncRNA:24   UUACAAUAUGUGUUUCUUGAUGUA   1   *=|||*||=*|||||||||||||| targets:572   UGUGUGAUGAACAAAGAACUACAU   595 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100815839 (LOC100815839), transcript variant X1, mRNA	uncharacterized LOC100815839(LOC100815839)	coding protein	psRNATarget