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BaseInfo

ncRNA ID novel_gma_miR6764
Species Glycine max
Class miRNA
Genome position Chr4:15372985-15373096 [+]
Reference genome Glycine_max_v2.0
Source SRR1451604
Length 24
Mature sequence(if miRNA) 1 - UGAGGAAGAUUUCUGAGUGCACCC - 24
Stem-loop(if miRNA) --U          ---      U    -C   AGUAC    UU A   -CCC      -   
   GAGGAAGAUU   UCUGAG GCAC  CCG     UAAG  C UCC    CUUUUC GUAU
   ||||||||||   |||||| ||||  |||     ||||  | |||    |||||| |||U
   CUCCUUUUAG   AGACUU UGUG  GGU     AUUC  G AGG    GAAAAG CAUU
UUU          UUC      -    AA   -----    -C A   CAUU      G   
Stem-loop sequence UGAGGAAGAUUUCUGAGUGCACCCCGAGUACUAAGUUCAUCCCCCCUUUUCGUAUUUUACGGAAAAGUUACGGAAGCCUUAUGGAAGUGUUUCAGACUUGAUUUUCCUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591883.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1078   UAGUGUGCUGAGAAAUCUUCCUCA   1101

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100777977), transcript variant X4, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100777977) coding protein psRNATarget
XM_014764360.1
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1197   UAGUGUGCUGAGAAAUCUUCCUCA   1220

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100777977), transcript variant X5, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100777977) coding protein psRNATarget
XM_006591882.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1736   UAGUGUGCUGAGAAAUCUUCCUCA   1759

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100777977), transcript variant X3, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100777977) coding protein psRNATarget
XM_003540057.3
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1782   UAGUGUGCUGAGAAAUCUUCCUCA   1805

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100777977), transcript variant X2, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100777977) coding protein psRNATarget
XM_006587670.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1603   UAGUGUGCUGAGAAAUCUUCCUCA   1626

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X6, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587671.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1609   UAGUGUGCUGAGAAAUCUUCCUCA   1632

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X9, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587669.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1691   UAGUGUGCUGAGAAAUCUUCCUCA   1714

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X5, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_014762357.1
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1715   UAGUGUGCUGAGAAAUCUUCCUCA   1738

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X8, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587668.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1811   UAGUGUGCUGAGAAAUCUUCCUCA   1834

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X7, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006591881.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:1621   UAGUGUGCUGAGAAAUCUUCCUCA   1644

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100777977), transcript variant X1, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100777977) coding protein psRNATarget
XM_014762356.1
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:2509   UAGUGUGCUGAGAAAUCUUCCUCA   2532

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X4, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587666.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:2605   UAGUGUGCUGAGAAAUCUUCCUCA   2628

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X3, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587667.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:2607   UAGUGUGCUGAGAAAUCUUCCUCA   2630

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X2, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
XM_006587664.2
ncRNA:24   CCCACGUGAGUCUUUAGAAGGAGU   1
  **|||==||*||||||||||||||
targets:2692   UAGUGUGCUGAGAAAUCUUCCUCA   2715

3.0 PREDICTED: Glycine max TATA-binding protein-associated factor BTAF1-like (LOC100784852), transcript variant X1, mRNA TATA-binding protein-associated factor BTAF1-like(LOC100784852) coding protein psRNATarget
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