| ncRNA ID | ath-miR167a-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:8108072-8108209 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 101 - GAUCAUGUUCGCAGUUUCACC - 121 |
| Stem-loop(if miRNA) |
U AC - U U A C - - -U -AU U UG GGUGC CGG CA C G UGAAGCUGC AGCAUGAUCUAAUU AG CU UCUUU CC UUGU UGU ||||| ||| || | | ||||||||| |||||||||||||| || || ||||| || |||| ||U CCACG GUC GU G C ACUUUGACG UUGUACUAGAUUAG UC GA AGAGA GG AGCA ACU C CU A U C C C C U CU AUU U GU |
| Stem-loop sequence | UGGUGCACCGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAAUUAGCUUUCUUUAUCCUUUGUUGUGUUUCAUGACGAUGGUUAAGAGAUCAGUCUCGAUUAGAUCAUGUUCGCAGUUUCACCCGUUGACUGUCGCACCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_119665.3 |
|
1.5 | Arabidopsis thaliana myb domain protein 32 (MYB32), mRNA | myb domain protein 32(MYB32) | coding protein | psRNATarget | |||||||||
| AK222112.1 |
|
3.0 | Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-91-L07 | NA | coding protein | psRNATarget | |||||||||
| NM_126157.4 |
|
3.0 | Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (DG1), mRNA | Tetratricopeptide repeat (TPR)-like superfamily protein(DG1) | coding protein | psRNATarget | |||||||||
| AK229379.1 |
|
3.0 | Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-L10 | NA | coding protein | psRNATarget |
| 1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
| 2 | PMID:12202040
"Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |