Search result

BaseInfo

ncRNA ID	novel_gma_miR6741
Species	Glycine max
Class	miRNA
Genome position	Chr7:26491720-26491782 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1292928
Length	23
Mature sequence(if miRNA)	41 - GAAGAGAGAGAAGAUUUGGGCUU - 63
Stem-loop(if miRNA)	--------              UUUGGGC     A         GAAGAGAGAGAAGA       UUUUU U         ||||||||||||||       |||||         CUUUUUUCUUUUCU       AAAAA A UUCUUUUA              -UUUAAU     A
Stem-loop sequence	GAAGAGAGAGAAGAUUUGGGCUUUUUAUAAAAAAAUAAUUUUCUUUUCUUUUUUCAUUUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001289284.1	ncRNA:23   UU--CGGGUUUAGAAGAGAGAGAAG   1   ||--|=|||||*||||||||||||| targets:18   AACCGUCCAAAGCUUCUCUCUCUUC   42 Target Full Sequence	1.0	Glycine max pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like (LOC100800884), mRNA	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like(LOC100800884)	coding protein	psRNATarget
BT094601.1	ncRNA:23   UU--CGGGUUUAGAAGAGAGAGAAG   1   ||--|=|||||*||||||||||||| targets:19   AACCGUCCAAAGCUUCUCUCUCUUC   43 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-24N24 unknown mRNA	NA	coding protein	psRNATarget
XM_006597691.2	ncRNA:23   UU--CGGGUUUAGAAGAGAGAGAAG   1   ||--|=|||||*||||||||||||| targets:93   AACCGUCCAAAGCUUCUCUCUCUUC   117 Target Full Sequence	1.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like (LOC100800884), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like(LOC100800884)	coding protein	psRNATarget
XM_006581063.2	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ***=|=||||||||||||||||* targets:631   UCUUCUAAAUCUUCUCUCUCUUG   653 Target Full Sequence	2.0	PREDICTED: Glycine max RNA-binding protein 38-like (LOC100779244), transcript variant X2, mRNA	RNA-binding protein 38-like(LOC100779244)	coding protein	psRNATarget
XM_006581062.2	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ***=|=||||||||||||||||* targets:628   UCUUCUAAAUCUUCUCUCUCUUG   650 Target Full Sequence	2.0	PREDICTED: Glycine max RNA-binding protein 38-like (LOC100779244), transcript variant X1, mRNA	RNA-binding protein 38-like(LOC100779244)	coding protein	psRNATarget
XM_014778772.1	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ***|=|*|||||||||||||||| targets:59   UUCCUCUAAUCUUCUCUCUCUUC   81 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_006584980.2	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ***|=|*|||||||||||||||| targets:59   UUCCUCUAAUCUUCUCUCUCUUC   81 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X3, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_006584979.2	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ***|=|*|||||||||||||||| targets:59   UUCCUCUAAUCUUCUCUCUCUUC   81 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X1, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_003549650.3	ncRNA:23   UUCGGGUUUAGAAGAGAGAGAAG   1   ||*|||*|||=|||||||||||| targets:41   AAUCCCUAAUUUUCUCUCUCUUC   63 Target Full Sequence	2.5	PREDICTED: Glycine max WD repeat-containing protein 76-like (LOC100778960), mRNA	WD repeat-containing protein 76-like(LOC100778960)	coding protein	psRNATarget
XM_014764559.1	ncRNA:23   UUCGGGUU-UAGAAGAGAGAGAAG   1   ***|||=|-||||||||||||||| targets:390   UUUCCCGAGAUCUUCUCUCUCUUC   413 Target Full Sequence	3.0	PREDICTED: Glycine max arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like (LOC100787759), transcript variant X2, mRNA	arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like(LOC100787759)	coding protein	psRNATarget