ncRNA ID | novel_gma_miR6740 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr20:44990099-44990256 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1295531;SRR1292928 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUAAGAACAUGACACGUGACAGU - 24 |
Stem-loop(if miRNA) |
--            C         A   GAUAAC                        UCAAUGAAAACAACA   -  -      C   UGUCAUGUGUCA GUUCUUAUU GAU      UGUCAUGUGUCAUGUUCUGAUUGG               AUG CA UUUCAU U   |||||||||||| ||||||||| |||      ||||||||||||||||||||||||               ||| || |||||| U   ACAGUGCACAGU CAAGAAUAA CUA      ACAGUACACAGUACAAGACUAACC               UAC GU GAGGUA U UG            A         A   AUACUA                        ---------------   A  U      C |
Stem-loop sequence | UGUCAUGUGUCACGUUCUUAUUAGAUGAUAACUGUCAUGUGUCAUGUUCUGAUUGGUCAAUGAAAACAACAAUGCAUUUCAUCUUUCAUGGAGUUGACAUCCAAUCAGAACAUGACACAUGACAAUCAUAAUCAAAUAAGAACAUGACACGUGACAGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LQ242574.1 |
|
1.5 | Sequence 8569 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
HI410444.1 |
|
1.5 | Sequence 8569 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
JB170905.1 |
|
1.5 | Sequence 8569 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
HI410445.1 |
|
1.5 | Sequence 8570 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
JB170906.1 |
|
1.5 | Sequence 8570 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ242575.1 |
|
1.5 | Sequence 8570 from Patent EP2985353 | NA | coding protein | psRNATarget |