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BaseInfo

ncRNA ID novel_gma_miR6735
Species Glycine max
Class miRNA
Genome position Chr1:1815523-1815631 [+]
Reference genome Glycine_max_v2.0
Source SRR1295531
Length 24
Mature sequence(if miRNA) 1 - UUUUGUGAAUGUGGUCUCUAAGCC - 24
Stem-loop(if miRNA) --         U          AGCCCAGAC           -     C   --    AU
  UUUUGUGAA GUGGUCUCUA         UUAAACGUUAA UGUUA AAA  AACA  C
  ||||||||| ||||||||||         ||||||||||| ||||| |||  ||||
  AAGGCAUUU UACCAGAGGU         AAUUUGUAAUU AUAAU UUU  UUGU  A
UU         C          --------A           G     A   CC    AU
Stem-loop sequence UUUUGUGAAUGUGGUCUCUAAGCCCAGACUUAAACGUUAAUGUUACAAAAACAAUCAUAUGUUCCUUUAUAAUAGUUAAUGUUUAAAUGGAGACCAUCUUUACGGAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006590741.2
ncRNA:24   CCGAAUCUCUGGUGUAAGUGUUUU   1
  **=*|||||=||||||||||||||
targets:1993   UUUGUAGAGGCCACAUUCACAAAA   2016

1.0 PREDICTED: Glycine max endoglucanase 5-like (LOC100812170), mRNA endoglucanase 5-like(LOC100812170) coding protein psRNATarget
XM_003539966.1
ncRNA:24   CCGAAUCUCUGGUGUAAGUGUUUU   1
  *****||=||=||||||||||||*
targets:309   ACACAAGGGAUCACAUUCACAAAC   332

3.0 PREDICTED: Glycine max ervatamin-B-like (LOC100817873), mRNA ervatamin-B-like(LOC100817873) coding protein psRNATarget
XM_003539965.2
ncRNA:24   CCGAAUCUCUGGUGUAAGUGUUUU   1
  *****||=||=||||||||||||*
targets:309   ACACAAGGGAUCACAUUCACAAAC   332

3.0 PREDICTED: Glycine max ervatamin-B-like (LOC100817340), mRNA ervatamin-B-like(LOC100817340) coding protein psRNATarget
XM_006582201.1
ncRNA:24   CCGAAUCUCUGGUGUAAGUGUUUU   1
  *****||=||=||||||||||||*
targets:309   AUACAAGGGAUCACAUUCACAAAC   332

3.0 PREDICTED: Glycine max zingipain-2-like (LOC100807398), mRNA zingipain-2-like(LOC100807398) coding protein psRNATarget