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BaseInfo

ncRNA ID novel_gma_miR6720
Species Glycine max
Class miRNA
Genome position Chr11:13784478-13784550 [+]
Reference genome Glycine_max_v2.0
Source SRR1295530
Length 22
Mature sequence(if miRNA) 1 - UCAAGUGUAGGAAGGCCAAGAG - 22
Stem-loop(if miRNA) --       UAG     -     AG    UC  -  AU
  UCAAGUG   GAAGG CCAAG  AGAA  AU CC  U
  |||||||   ||||| |||||  ||||  || ||
  GGUUCAC   UUUUC GGUUU  UCUU  UA GG  U
UA       CCA     A     -G    CA  U  AG
Stem-loop sequence UCAAGUGUAGGAAGGCCAAGAGAGAAUCAUCCAUUUGAGGUAUACUUCUGUUUGGACUUUUACCCACUUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764148.1
ncRNA:22   GAGAACCGGAAGGAUGUGAACU   1
  ||-||||*=||||||||||||*
targets:1532   CU-UUGGAUUUCCUACACUUGU   1552

3.0 PREDICTED: Glycine max GDSL esterase/lipase At5g22810 (LOC100775618), transcript variant X2, mRNA GDSL esterase/lipase At5g22810(LOC100775618) coding protein psRNATarget
XM_003538132.3
ncRNA:22   GAGAACCGGAAGGAUGUGAACU   1
  ||-||||*=||||||||||||*
targets:1565   CU-UUGGAUUUCCUACACUUGU   1585

3.0 PREDICTED: Glycine max GDSL esterase/lipase At5g22810 (LOC100775618), transcript variant X1, mRNA GDSL esterase/lipase At5g22810(LOC100775618) coding protein psRNATarget