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BaseInfo

ncRNA ID novel_gma_miR6711
Species Glycine max
Class miRNA
Genome position Chr19:48860184-48860404 [-]
Reference genome Glycine_max_v2.0
Source SRR1295530
Length 24
Mature sequence(if miRNA) 1 - UAGGACGAAAAACAAAAAAGUGCC - 24
Stem-loop(if miRNA) --         U C          U           A        G              C              C  CA    GAU             A      UUCA
  CACUUUUUU G UUUUUGUCCU GCAAAAUUAUU UUUUGUUU UAGUCCUUGCAAAU AUGUUUGUUUUGUU UU  UUCU   GGCGCUUUAGAUA CGUUUU    C
  ||||||||| | |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||   ||||||||||||| ||||||
  GUGAAAAAA C AAAAGCAGGA CGUUUUAAUAA AAAACAAA AUUAGGAAUGUUUA UACAAACAAAACAA AA  AAGA   UCGUGAAAUCUAU GCGAAA    A
CC         - A          U           A        A              A              A  UC    AUU             C      CUUG
Stem-loop sequence CACUUUUUUUGCUUUUUGUCCUUGCAAAAUUAUUAUUUUGUUUGUAGUCCUUGCAAAUCAUGUUUGUUUUGUUCUUCAUUCUGAUGGCGCUUUAGAUAACGUUUUUUCACAGUUCAAAGCGCUAUCUAAAGUGCUUUAAGAACUAAAAACAAAACAAACAUAAUUUGUAAGGAUUAAAAACAAAAAAAUAAUUUUGCUAGGACGAAAAACAAAAAAGUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243861.1
ncRNA:24   CCGUGAAAAAACAAAAAGCAGGAU   1
  ||||-||||||||||||||||=|*
targets:37   GGCA-UUUUUUGUUUUUCGUCUUU   59

2.5 Glycine max cDNA, clone: GMFL01-01-H07 NA coding protein psRNATarget