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BaseInfo

ncRNA ID novel_gma_miR6688
Species Glycine max
Class miRNA
Genome position Chr20:7715027-7715131 [+]
Reference genome Glycine_max_v2.0
Source SRR1295529
Length 24
Mature sequence(if miRNA) 1 - CUCACGUUCUCCACUUCUCCUUGA - 24
Stem-loop(if miRNA) --    C      C       - -   A     -------------AG  U AGA       
  CUCA GUUCUC ACUUCUC C UUG CUGAG               GC G   GCUGCAGU
  |||| |||||| ||||||| | ||| |||||               || |   |||||||A
  GAGU CAGGAG UGAGGAG G AAC GAUUU               CG C   CGAUGUCG
GA    -      -       U U   -     GGAAUUAGAAUAAAA  - -GG       
Stem-loop sequence CUCACGUUCUCCACUUCUCCUUGACUGAGAGGCUGAGAGCUGCAGUAGCUGUAGCGGCGCAAAAUAAGAUUAAGGUUUAGCAAUGUGAGGAGUGAGGACUGAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773165.1
ncRNA:24   AGUUCCUCUUCACCUCUUGCACUC   1
  ||||||||||||||||||=|||||
targets:250   UCAAGGAGAAGUGGAGAAUGUGAG   273

1.5 PREDICTED: Glycine max zinc finger BED domain-containing protein DAYSLEEPER-like (LOC106797883), mRNA zinc finger BED domain-containing protein DAYSLEEPER-like(LOC106797883) coding protein psRNATarget