Search result

BaseInfo

ncRNA ID	novel_gma_miR6673
Species	Glycine max
Class	miRNA
Genome position	Chr9:4893705-4893820 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295527
Length	24
Mature sequence(if miRNA)	93 - AAGGACCGAUGUAGAAUGCUGAGC - 116
Stem-loop(if miRNA)	--                     -------    --AA          CAACA    ACA  GG   UCAGCAUUCUACAUCGGUCCU       UGAU    GUAGAAUAUU     UUCU   UC  U   |||||||||||||||||||||       ||||    ||||||||||     ||||   ||   AGUCGUAAGAUGUAGCCAGGA       ACUG    CAUCUUAUAG     AGGA   AG  U CG                     AGUCUAC    GCAG          ---CA    ACG  AU
Stem-loop sequence	UCAGCAUUCUACAUCGGUCCUUGAUAAGUAGAAUAUUCAACAUUCUACAUCGGUUUAGAGCAAGGAACGAUAUUCUACGACGGUCACAUCUGAAGGACCGAUGUAGAAUGCUGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006598094.2	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   ||*=|||||||||||||||||||* targets:931   GCAUAGCAUUCUACAUCGGUCCUC   954 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   ||*=|||||||||||||||||||* targets:1044   GCAUAGCAUUCUACAUCGGUCCUC   1067 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   ||*=|||||||||||||||||||* targets:1204   GCAUAGCAUUCUACAUCGGUCCUC   1227 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   ||*=|||||||||||||||||||* targets:1481   GCAUAGCAUUCUACAUCGGUCCUC   1504 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   ||*=|||||||||||||||||||* targets:1644   GCAUAGCAUUCUACAUCGGUCCUC   1667 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_006583907.2	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |****||*|||||||||||||||| targets:149   GAAAUGCUUUCUACAUCGGUCCUU   172 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC102668119 (LOC102668119), transcript variant X1, mRNA	uncharacterized LOC102668119(LOC102668119)	coding protein	psRNATarget
XM_006598094.2	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |**=|*||||||||||=||||||| targets:1016   GAAUAACAUUCUACAUUGGUCCUU   1039 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |**=|*||||||||||=||||||| targets:1129   GAAUAACAUUCUACAUUGGUCCUU   1152 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |**=|*||||||||||=||||||| targets:1289   GAAUAACAUUCUACAUUGGUCCUU   1312 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |**=|*||||||||||=||||||| targets:1566   GAAUAACAUUCUACAUUGGUCCUU   1589 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:24   CGAGUCGUAAGAUGUAGCCAGGAA   1   |**=|*||||||||||=||||||| targets:1729   GAAUAACAUUCUACAUUGGUCCUU   1752 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget