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BaseInfo

ncRNA ID novel_gma_miR6657
Species Glycine max
Class miRNA
Genome position Chr20:13771653-13771778 [+]
Reference genome Glycine_max_v2.0
Source SRR1292927
Length 21
Mature sequence(if miRNA) 1 - CCAGACCAGACUUUGAAAGGC - 21
Stem-loop(if miRNA) --      C       --      - ---       UAACCUACAAU    UUUU       GAGCCU    
  CCAGAC AGACUUU  GAAAGG C   CUGAGCC           GAAU    GAGGUCU      GGCCU
  |||||| |||||||  |||||| |   |||||||           ||||    |||||||      ||||A
  GGUCUG UCUGAAA  UUUUCC G   GGCUCGG           UUUA    UUUCAGA      CCGGU
CC      A       AU      A UUC       ----------U    ---U       AACUAU    
Stem-loop sequence CCAGACCAGACUUUGAAAGGCCUGAGCCUAACCUACAAUGAAUUUUUGAGGUCUGAGCCUGGCCUAUGGCCUAUCAAAGACUUUUAUUUUGGCUCGGCUUGACCUUUUUAAAAGUCUAGUCUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003526283.3
ncRNA:21   CGGAAAGUUUCAGACCAGACC   1
  **||||=|||||||||||||*
targets:338   AACUUUUAAAGUCUGGUCUGU   358

2.0 PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792539), mRNA UPF0481 protein At3g47200-like(LOC100792539) coding protein psRNATarget