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BaseInfo

ncRNA ID ath-miR167a-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:8108072-8108209 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 19 - UGAAGCUGCCAGCAUGAUCUA - 39
Stem-loop(if miRNA) U     AC   -  U U A         C              -  -  -U     -AU  U    UG  
 GGUGC  CGG CA C G UGAAGCUGC AGCAUGAUCUAAUU AG CU  UCUUU   CC UUGU  UGU
 |||||  ||| || | | ||||||||| |||||||||||||| || ||  |||||   || ||||  ||U
 CCACG  GUC GU G C ACUUUGACG UUGUACUAGAUUAG UC GA  AGAGA   GG AGCA  ACU
C     CU   A  U C C         C              C  U  CU     AUU  U    GU  
Stem-loop sequence UGGUGCACCGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAAUUAGCUUUCUUUAUCCUUUGUUGUGUUUCAUGACGAUGGUUAAGAGAUCAGUCUCGAUUAGAUCAUGUUCGCAGUUUCACCCGUUGACUGUCGCACCC

Reference

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"Expression of Arabidopsis MIRNA genes";
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Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
6 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).