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BaseInfo

ncRNA ID novel_gma_miR6649
Species Glycine max
Class miRNA
Genome position Chr10:42680883-42680978 [+]
Reference genome Glycine_max_v2.0
Source SRR1295527
Length 24
Mature sequence(if miRNA) 73 - UAAAGAAUCUCACGCUAAAGGACG - 96
Stem-loop(if miRNA) --  G   -    UU       G   -- G    CGA    U  -     UG
  UU UUU GUGU  GGAUUCU UGA  U AUCC   ACCU GU GUUUG  G
  || ||| ||||  ||||||| |||  | ||||   |||| || |||||
  AG AAA CGCA  UCUAAGA AUU  A UAGG   UGGA CA UAGAU  G
GC  G   U    -C       A   UC G    ---    U  G     GA
Stem-loop sequence UUGUUUGUGUUUGGAUUCUGUGAUGAUCCCGAACCUUGUGUUUGUGGGAGUAGAUGACUAGGUGGAUGACUUUAAAGAAUCUCACGCUAAAGGACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245031.1
ncRNA:24   GCAGGAAAUCGCACUCUAAGAAAU   1
  *|****||||=||||||||||||*
targets:172   GGAAAAUUAGUGUGAGAUUCUUUU   195

3.0 Glycine max cDNA, clone: GMFL01-19-H17 NA coding protein psRNATarget
XM_003545790.3
ncRNA:24   GCAGGAAAUCGCACUCUAAGAAAU   1
  *|****||||=||||||||||||*
targets:212   GGAAAAUUAGUGUGAGAUUCUUUU   235

3.0 PREDICTED: Glycine max calmodulin-binding protein 60 C (LOC100802994), mRNA calmodulin-binding protein 60 C(LOC100802994) coding protein psRNATarget