Search result

BaseInfo

ncRNA ID novel_gma_miR6611
Species Glycine max
Class miRNA
Genome position Chr14:32170624-32170787 [+]
Reference genome Glycine_max_v2.0
Source SRR1295526
Length 24
Mature sequence(if miRNA) 1 - AAGGAGAAGGUAGACCAGAUGAGG - 24
Stem-loop(if miRNA) --      A       C              U    AACAAAC      A                C   AAUG   AUAA GA
  AAGGAG AGGUAGA CAGAUGAGGAUGAA ACAU       CCUGUU AUGAUUACAUUGGAGG AAC    AAG    U  C
  |||||| ||||||| |||||||||||||| ||||       |||||| |||||||||||||||| |||    |||    |
  UUCCUC UCCAUCU GUUUACUCCUACUU UGUA       GGAUAA UACUAAUGUAACCUCC UUG    UUC    A  U
GG      C       U              C    CUAUCUA      C                U   ---A   -GAG AG
Stem-loop sequence AAGGAGAAGGUAGACCAGAUGAGGAUGAAUACAUAACAAACCCUGUUAAUGAUUACAUUGGAGGCAACAAUGAAGAUAAUGACUGAAGAGCUUAGUUUCCUCCAAUGUAAUCAUCAAUAGGAUCUAUCAUGUCUUCAUCCUCAUUUGUUCUACCUCCUCCUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545091.3
ncRNA:24   GGAGUAGACCAGAUGGAAGAGGAA   1
  |***||||*||||||||||||||*
targets:718   CACGAUCUCGUCUACCUUCUCCUG   741

2.0 PREDICTED: Glycine max probable galacturonosyltransferase 15 (LOC100802290), mRNA probable galacturonosyltransferase 15(LOC100802290) coding protein psRNATarget