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BaseInfo

ncRNA ID	novel_gma_miR6603
Species	Glycine max
Class	miRNA
Genome position	Chr9:38336013-38336139 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295526
Length	22
Mature sequence(if miRNA)	1 - UGAAGAGGAAGAGAGAGUGAUG - 22
Stem-loop(if miRNA)	--   A           AGU   GC       G UG           UUAUU   --  CU   G   UGA GAGGAAGAGAG   GAU  AGCCAAG A  ACUUGCCGGCG     AUU  UG  CAU U   ||| |||||||||||   |||  ||||||| |  |||||||||||     |||  ||  |||   ACU CUUCUUCUCUC   UUG  UCGGUUU U  UGAACGGCCGU     UGG  AC  GUA U GU   -           GUU   UA       G GU           UCCUU   CC  UC   C
Stem-loop sequence	UGAAGAGGAAGAGAGAGUGAUGCAGCCAAGGAUGACUUGCCGGCGUUAUUAUUUGCUCAUGUUCAUGCUCACCGGUUUCCUUGCCGGCAAGUUGUGUUUGGCUAUGUUUUGCUCUCUUCUUCUCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003531561.3	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   |**|||||||||||=||||||| targets:1183   CUCCACUCUCUCUUUCUCUUCA   1204 Target Full Sequence	1.5	PREDICTED: Glycine max 5'-nucleotidase SurE-like (LOC100776267), mRNA	5'-nucleotidase SurE-like(LOC100776267)	coding protein	psRNATarget
XM_006600681.2	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   |=|||||||||||||=|||||* targets:147   CGUCACUCUCUCUUCUUCUUCU   168 Target Full Sequence	2.5	PREDICTED: Glycine max probable receptor-like protein kinase At5g15080 (LOC100785385), transcript variant X1, mRNA	probable receptor-like protein kinase At5g15080(LOC100785385)	coding protein	psRNATarget
XM_006600682.2	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   |=|||||||||||||=|||||* targets:147   CGUCACUCUCUCUUCUUCUUCU   168 Target Full Sequence	2.5	PREDICTED: Glycine max probable receptor-like protein kinase At5g15080 (LOC100785385), transcript variant X2, mRNA	probable receptor-like protein kinase At5g15080(LOC100785385)	coding protein	psRNATarget
XM_006603058.2	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   |||=|||||||||*|||||||| targets:209   CAUUACUCUCUCUCCCUCUUCA   230 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g18840-like (LOC100801301), mRNA	pentatricopeptide repeat-containing protein At4g18840-like(LOC100801301)	coding protein	psRNATarget
XM_014765155.1	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   ||*||||||||||||=|||||* targets:1752   CAACACUCUCUCUUCUUCUUCC   1773 Target Full Sequence	2.5	PREDICTED: Glycine max GTPase Era-like (LOC100795454), transcript variant X3, mRNA	GTPase Era-like(LOC100795454)	coding protein	psRNATarget
XM_014765153.1	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   ||*||||||||||||=|||||* targets:1752   CAACACUCUCUCUUCUUCUUCC   1773 Target Full Sequence	2.5	PREDICTED: Glycine max GTPase Era-like (LOC100795454), transcript variant X2, mRNA	GTPase Era-like(LOC100795454)	coding protein	psRNATarget
XM_003519844.3	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   ||*||||||||||||=|||||* targets:1751   CAACACUCUCUCUUCUUCUUCC   1772 Target Full Sequence	2.5	PREDICTED: Glycine max GTPase Era-like (LOC100795454), transcript variant X1, mRNA	GTPase Era-like(LOC100795454)	coding protein	psRNATarget
XM_003521890.3	ncRNA:22   GUAGUGAGAGAGAAGGAGAAGU   1   ||-||||||||||||=|||||= targets:354   CA-CACUCUCUCUUCUUCUUCG   374 Target Full Sequence	2.5	PREDICTED: Glycine max UTP:RNA uridylyltransferase 1-like (LOC100818029), mRNA	UTP:RNA uridylyltransferase 1-like(LOC100818029)	coding protein	psRNATarget
XM_014779169.1	ncRNA:22   GU-AGUGAGAGAGAAGGAGAAGU   1   ||-||*||||||||*|||||||| targets:59   CACUCUCUCUCUCUCCCUCUUCA   81 Target Full Sequence	2.5	PREDICTED: Glycine max GATA transcription factor 28-like (LOC100812262), transcript variant X3, mRNA	GATA transcription factor 28-like(LOC100812262)	coding protein	psRNATarget