Search result

BaseInfo

ncRNA ID novel_gma_miR6601
Species Glycine max
Class miRNA
Genome position Chr8:28937137-28937231 [-]
Reference genome Glycine_max_v2.0
Source SRR1295526;SRR1294477
Length 24
Mature sequence(if miRNA) 1 - AUUGGCCUUCGUAACUUCCGGAAG - 24
Stem-loop(if miRNA) --               U  A            CCUU    C     
  UCCGGAAGUUACGAA GC AAUUCCGGAAGA    CUUC GGAAGU
  ||||||||||||||| || ||||||||||||    |||| |||||A
  AGGCCUUCAAUGCUU CG UUAAGGCUUUCU    GAAG CCUUUG
GA               C  G            UCAC    A     
Stem-loop sequence UCCGGAAGUUACGAAUGCAAAUUCCGGAAGACCUUCUUCCGGAAGUAGUUUCCAGAAGCACUUCUUUCGGAAUUGGCCUUCGUAACUUCCGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014770878.1
ncRNA:24   GAAGGCCUUCAAUGCUUCCGGUUA   1
  ***==|||*||||=||||||||||
targets:282   GCAUUGGAUGUUAUGAAGGCCAAU   305

2.5 PREDICTED: Glycine max putative uncharacterized protein At4g01020, chloroplastic (HELRP), transcript variant X2, mRNA putative uncharacterized protein At4g01020, chloroplastic(HELRP) coding protein psRNATarget
JX392389.1
ncRNA:24   GAAGGCCUUCAAUGCUUCCGGUUA   1
  ***==|||*||||=||||||||||
targets:771   GCAUUGGAUGUUAUGAAGGCCAAU   794

2.5 Glycine max helicase/plant I subfamily protein (HELRP) mRNA, complete cds NA coding protein psRNATarget
XM_003552760.3
ncRNA:24   GAAGGCCUUCAAUGCUUCCGGUUA   1
  ***==|||*||||=||||||||||
targets:1256   GCAUUGGAUGUUAUGAAGGCCAAU   1279

2.5 PREDICTED: Glycine max putative uncharacterized protein At4g01020, chloroplastic (HELRP), transcript variant X1, mRNA putative uncharacterized protein At4g01020, chloroplastic(HELRP) coding protein psRNATarget
XM_003537514.3
ncRNA:24   GAAGGCCUUCAAUGCUUCCGGUUA   1
  ****=|||*||||=||||||||||
targets:1161   GCAGUGGAUGUUAUGAAGGCCAAU   1184

2.5 PREDICTED: Glycine max putative uncharacterized protein At4g01020, chloroplastic (LOC100806464), mRNA putative uncharacterized protein At4g01020, chloroplastic(LOC100806464) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.