Search result

BaseInfo

ncRNA ID novel_gma_miR6596
Species Glycine max
Class miRNA
Genome position Chr8:29461101-29461182 [+]
Reference genome Glycine_max_v2.0
Source SRR1295526
Length 24
Mature sequence(if miRNA) 59 - AAAAAUUAACAAUGUAGGCCGGCU - 82
Stem-loop(if miRNA) --         G     --        --     G GG  GUU
  CUGGCCUAU AUUGU  AUUUUUUA  CGGCA U  AA   U
  ||||||||| |||||  ||||||||  ||||| |  ||   U
  GGCCGGAUG UAACA  UAAAAAAU  GUUGU G  UU   C
UC         -     AU        AC     G UU  GUU
Stem-loop sequence CUGGCCUAUGAUUGUAUUUUUUACGGCAGUGGAAGUUUUCUUGUUUUGGUGUUGCAUAAAAAAUUAACAAUGUAGGCCGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT096310.1
ncRNA:24   UCGGCCGGAUGUAACAAUUAAAAA   1
  |||||*|||||||||||*||||||
targets:231   AGCCGACCUACAUUGUUCAUUUUU   254

2.5 Soybean clone JCVI-FLGm-9L3 unknown mRNA NA coding protein psRNATarget
XM_003528446.3
ncRNA:24   UCG----GCCGGAUGUAACAAUUAAAAA   1
  =||----||*=||*||||||||||||||
targets:1604   GGCUCUGCGAUCUUCAUUGUUAAUUUUU   1631

3.0 PREDICTED: Glycine max DNA polymerase I, thermostable-like (LOC100792557), mRNA DNA polymerase I, thermostable-like(LOC100792557) coding protein psRNATarget