Search result

BaseInfo

ncRNA ID	novel_gma_miR6564
Species	Glycine max
Class	miRNA
Genome position	Chr15:27322486-27322662 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295525;SRR1451607;SRR1451611
Length	24
Mature sequence(if miRNA)	1 - UUGGUGCUGAUUCUUCUAGUGAGA - 24
Stem-loop(if miRNA)	--G        U                  -  UC      G                     C     A          -             CACUAGAA GAUCAGCACCAAUCUGUG CU  UUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUUUGUUUU GUAAAUUACA    |||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||G    GUGAUCUU UUAGUCGUGGUUAGGUAC GA  AAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GGAAACGAAA CAUUUGAUGU AGA        C                  U  -C      G                     C     -          A
Stem-loop sequence	GCACUAGAAUGAUCAGCACCAAUCUGUGCUUCUUCCUCGUCUACCAGCUCAAUAUCUUUCCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUGGUAGAGGAGGAACAGUCAUGGAUUGGUGCUGAUUCUUCUAGUGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014766177.1	ncRNA:24   AGAGUGAUCUUCUUAGUCGUGGUU   1   ****||*||||||||||||||||| targets:415   AAAAACAAGAAGAAUCAGCACCAA   438 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC106795597 (LOC106795597), mRNA	uncharacterized LOC106795597(LOC106795597)	coding protein	psRNATarget
XM_014773249.1	ncRNA:24   AGAGUGAUCUUCUUAGUCGUGGUU   1   ****||*||||||||||||||||| targets:1529   AAAAACAAGAAGAAUCAGCACCAA   1552 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100788241 (LOC100788241), mRNA	uncharacterized LOC100788241(LOC100788241)	coding protein	psRNATarget
XM_003520454.3	ncRNA:24   AGAGUGAUCUUCUUAGUCGUGGUU   1   ****||*||||||||||||||||| targets:3340   AAAAACAAGAAGAAUCAGCACCAA   3363 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100804484 (LOC100804484), mRNA	uncharacterized LOC100804484(LOC100804484)	coding protein	psRNATarget