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BaseInfo

ncRNA ID novel_gma_miR6563
Species Glycine max
Class miRNA
Genome position Chr15:29559660-29559717 [-]
Reference genome Glycine_max_v2.0
Source SRR1295525
Length 24
Mature sequence(if miRNA) 35 - CCCGAUGUUGGAUCAAUUUGAGCC - 58
Stem-loop(if miRNA) --  -        GA     UU     AUUU
  CC CGAUGUUG  UCAAU  GAGCC    A
  || ||||||||  |||||  |||||
  GG GUUACAGC  AGUUA  UUUGG    U
UA  U        --     -C     GACA
Stem-loop sequence CCCGAUGUUGGAUCAAUUUGAGCCAUUUAUACAGGGUUUCAUUGACGACAUUGUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HQ896929.1
ncRNA:24   CCGAGUUUAACUAGGUUGUAGCCC   1
  ***|=|||||*|||||||||=|||
targets:95   ACAUUAAAUUCAUCCAACAUUGGG   118

2.5 Glycine max 4-coumarate:CoA ligase (4CL) mRNA, complete cds NA coding protein psRNATarget
NM_001256363.1
ncRNA:24   CCGAGUUUAACUAGGUUGUAGCCC   1
  ***|=|||||*|||||||||=|||
targets:95   ACAUUAAAUUCAUCCAACAUUGGG   118

2.5 Glycine max 4-coumarate--CoA ligase-like 7-like (4CL), mRNA 4-coumarate--CoA ligase-like 7-like(4CL) coding protein psRNATarget