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BaseInfo

ncRNA ID	novel_gma_miR6550
Species	Glycine max
Class	miRNA
Genome position	Chr1:12620546-12620683 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295525
Length	24
Mature sequence(if miRNA)	115 - GAACCGAUGUAGAAUGAUGAGCAU - 138
Stem-loop(if miRNA)	--      G          -AG   UCUU                   C                 UUUG   GCUCAU AUUCUACAUC   UCU    AGAACUGAUGUAGAAUGUU AUCAUUCUAAGACGGUC    A   |||||| ||||||||||   |||    ||||||||||||||||||| |||||||||||||||||   CGAGUA UAAGAUGUAG   AGA    UUUUGGCUACAUCUUACAA UGGUAAGAUUCUGCCAG    C UA      G          CCA   -UUC                   U                 UGCA
Stem-loop sequence	GCUCAUGAUUCUACAUCAGUCUUCUUAGAACUGAUGUAGAAUGUUCAUCAUUCUAAGACGGUCUUUGACACGUGACCGUCUUAGAAUGGUUAACAUUCUACAUCGGUUUUCUUAGAACCGAUGUAGAAUGAUGAGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003539359.3	ncRNA:24   UACGAGUA-GUAAGAUGUAGCCAAG   1   |***||||-|||||||||||||||| targets:2798   AAAGUCAUGCAUUCUACAUCGGUUC   2822 Target Full Sequence	2.0	PREDICTED: Glycine max MLO-like protein 6 (LOC100776714), mRNA	MLO-like protein 6(LOC100776714)	coding protein	psRNATarget
XM_014767461.1	ncRNA:24   UACGAGUAGUAAGAUGUAGCCAAG   1   |*****|||||||||||||||||* targets:446   AGAACAAUCAUUCUACAUCGGUUA   469 Target Full Sequence	2.0	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_014762037.1	ncRNA:24   UACGAGUAGUAAGAUGUAGCCAAG   1   |||**=|||||||||=|||||||| targets:903   AUGAGUAUCAUUCUAUAUCGGUUC   926 Target Full Sequence	2.5	PREDICTED: Glycine max putative DUF21 domain-containing protein At1g03270 (LOC102659380), mRNA	putative DUF21 domain-containing protein At1g03270(LOC102659380)	coding protein	psRNATarget
XM_006598094.2	ncRNA:24   UACGAGUA--GUAAGAUGUAGCCAAG   1   |****|||--|||||||||||||||| targets:840   AAAAACAUUGCAUUCUACAUCGGUUC   865 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:24   UACGAGUA--GUAAGAUGUAGCCAAG   1   |****|||--|||||||||||||||| targets:953   AAAAACAUUGCAUUCUACAUCGGUUC   978 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:24   UACGAGUA--GUAAGAUGUAGCCAAG   1   |****|||--|||||||||||||||| targets:1113   AAAAACAUUGCAUUCUACAUCGGUUC   1138 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:24   UACGAGUA--GUAAGAUGUAGCCAAG   1   |****|||--|||||||||||||||| targets:1390   AAAAACAUUGCAUUCUACAUCGGUUC   1415 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:24   UACGAGUA--GUAAGAUGUAGCCAAG   1   |****|||--|||||||||||||||| targets:1553   AAAAACAUUGCAUUCUACAUCGGUUC   1578 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014767461.1	ncRNA:24   UACGAGUAGUAAGAUGUAGCCAAG   1   |||=*|=*|||||||||||||||* targets:2144   AUGUCCGACAUUCUACAUCGGUUG   2167 Target Full Sequence	3.0	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget