Search result

BaseInfo

ncRNA ID novel_gma_miR6541
Species Glycine max
Class miRNA
Genome position Chr1:9923250-9923308 [-]
Reference genome Glycine_max_v2.0
Source SRR1295525;SRR1295530;SRR1451607
Length 21
Mature sequence(if miRNA) 39 - UUCUGGUCGCCCAAUGGUAGC - 59
Stem-loop(if miRNA) -    --G        A   UAGCA    GUA
 UUCU   GUCGCCCA UGG     GUCA   C
 ||||   |||||||| |||     ||||
 AAGG   CAGCGGGU ACC     CAGU   A
C    AAA        -   ---UG    ACU
Stem-loop sequence UUCUGGUCGCCCAAUGGUAGCAGUCAGUACAUCAUGACGUCCAUGGGCGACAAAGGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB934279.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:2979   GCUGCCAUUGGGCGACCAGAA   2999

1.0 Glycine max GmTNP4b mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
AB934278.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:2979   GCUGCCAUUGGGCGACCAGAA   2999

1.0 Glycine max GmTNP4a mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
XM_014763083.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:2536   GCUGCCAUUGGGCGACCAGAA   2556

1.0 PREDICTED: Glycine max uncharacterized LOC106794966 (LOC106794966), transcript variant X2, mRNA uncharacterized LOC106794966(LOC106794966) coding protein psRNATarget
AB934277.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:990   GCUGCCAUUGGGCGACCAGAA   1010

1.0 Glycine max GmTNP3b mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
AB934276.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:990   GCUGCCAUUGGGCGACCAGAA   1010

1.0 Glycine max GmTNP3a mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
XM_014766664.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:1234   GCUGCCAUUGGGCGACCAGAA   1254

1.0 PREDICTED: Glycine max uncharacterized LOC102661059 (LOC102661059), mRNA uncharacterized LOC102661059(LOC102661059) coding protein psRNATarget
XM_014764775.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:1080   GCUGCCAUUGGGCGACCAGAA   1100

1.0 PREDICTED: Glycine max uncharacterized LOC106795347 (LOC106795347), mRNA uncharacterized LOC106795347(LOC106795347) coding protein psRNATarget
XM_014768279.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:954   GCUGCCAUUGGGCGACCAGAA   974

1.0 PREDICTED: Glycine max uncharacterized LOC100783027 (LOC100783027), transcript variant X2, mRNA uncharacterized LOC100783027(LOC100783027) coding protein psRNATarget
XM_014771679.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:948   GCUGCCAUUGGGCGACCAGAA   968

1.0 PREDICTED: Glycine max uncharacterized LOC100802717 (LOC100802717), mRNA uncharacterized LOC100802717(LOC100802717) coding protein psRNATarget
XM_014767658.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:882   GCUGCCAUUGGGCGACCAGAA   902

1.0 PREDICTED: Glycine max uncharacterized LOC106796104 (LOC106796104), mRNA uncharacterized LOC106796104(LOC106796104) coding protein psRNATarget
XM_014773195.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  ||||||||||||||||||||=
targets:1485   GCUACCAUUGGGCGACCAGAG   1505

1.0 PREDICTED: Glycine max uncharacterized LOC102660284 (LOC102660284), mRNA uncharacterized LOC102660284(LOC102660284) coding protein psRNATarget
XM_014776209.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:1114   GCUGCCAUUGGGCGACCAGAA   1134

1.0 PREDICTED: Glycine max uncharacterized LOC106798914 (LOC106798914), mRNA uncharacterized LOC106798914(LOC106798914) coding protein psRNATarget
XM_014777433.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:971   GCUGCCAUUGGGCGACCAGAA   991

1.0 PREDICTED: Glycine max uncharacterized LOC102659554 (LOC102659554), mRNA uncharacterized LOC102659554(LOC102659554) coding protein psRNATarget
XM_014767502.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:878   GCUGCCAUUGGGCGACCAGAA   898

1.0 PREDICTED: Glycine max uncharacterized LOC106796056 (LOC106796056), mRNA uncharacterized LOC106796056(LOC106796056) coding protein psRNATarget
XM_014761685.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:490   GCUGCCAUUGGGCGACCAGAA   510

1.0 PREDICTED: Glycine max uncharacterized LOC106794416 (LOC106794416), mRNA uncharacterized LOC106794416(LOC106794416) coding protein psRNATarget
XM_014767671.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:262   GCUGCCAUUGGGCGACCAGAA   282

1.0 PREDICTED: Glycine max uncharacterized LOC106796113 (LOC106796113), mRNA uncharacterized LOC106796113(LOC106796113) coding protein psRNATarget
XM_014769452.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:460   GCUGCCAUUGGGCGACCAGAA   480

1.0 PREDICTED: Glycine max uncharacterized LOC102662059 (LOC102662059), transcript variant X3, mRNA uncharacterized LOC102662059(LOC102662059) coding protein psRNATarget
XM_014770301.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:1184   GCUGCCAUUGGGCGACCAGAA   1204

1.0 PREDICTED: Glycine max uncharacterized LOC100797521 (LOC100797521), transcript variant X2, mRNA uncharacterized LOC100797521(LOC100797521) coding protein psRNATarget
XM_014764019.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:543   GCUGCCAUUGGGCGACCAGAA   563

1.0 PREDICTED: Glycine max uncharacterized LOC102665738 (LOC102665738), mRNA uncharacterized LOC102665738(LOC102665738) coding protein psRNATarget
XM_014769450.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:328   GCUGCCAUUGGGCGACCAGAA   348

1.0 PREDICTED: Glycine max uncharacterized LOC102662059 (LOC102662059), transcript variant X1, mRNA uncharacterized LOC102662059(LOC102662059) coding protein psRNATarget
XM_014769451.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:328   GCUGCCAUUGGGCGACCAGAA   348

1.0 PREDICTED: Glycine max uncharacterized LOC102662059 (LOC102662059), transcript variant X2, mRNA uncharacterized LOC102662059(LOC102662059) coding protein psRNATarget
XM_014763082.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:907   GCUGCCAUUGGGCGACCAGAA   927

1.0 PREDICTED: Glycine max uncharacterized LOC106794965 (LOC106794965), mRNA uncharacterized LOC106794965(LOC106794965) coding protein psRNATarget
XM_014770300.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:952   GCUGCCAUUGGGCGACCAGAA   972

1.0 PREDICTED: Glycine max uncharacterized LOC100797521 (LOC100797521), transcript variant X1, mRNA uncharacterized LOC100797521(LOC100797521) coding protein psRNATarget
XM_014776028.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:318   GCUGCCAUUGGGCGACCAGAA   338

1.0 PREDICTED: Glycine max uncharacterized LOC106798850 (LOC106798850), mRNA uncharacterized LOC106798850(LOC106798850) coding protein psRNATarget
XM_014770294.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:284   GCUGCCAUUGGGCGACCAGAA   304

1.0 PREDICTED: Glycine max uncharacterized LOC106796794 (LOC106796794), mRNA uncharacterized LOC106796794(LOC106796794) coding protein psRNATarget
XM_014771727.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||||||||||||
targets:479   GCUGCCAUUGGGCGACCAGAA   499

1.0 PREDICTED: Glycine max uncharacterized LOC102666567 (LOC102666567), mRNA uncharacterized LOC102666567(LOC102666567) coding protein psRNATarget
XM_006593161.2
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |=|=|||||||||||||||||
targets:145   GUUGCCAUUGGGCGACCAGAA   165

1.0 PREDICTED: Glycine max uncharacterized LOC102661326 (LOC102661326), mRNA uncharacterized LOC102661326(LOC102661326) coding protein psRNATarget
XM_014770085.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||==||||||||||||||||
targets:2334   GCUGUCAUUGGGCGACCAGAA   2354

2.0 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X1, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770088.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||==||||||||||||||||
targets:2254   GCUGUCAUUGGGCGACCAGAA   2274

2.0 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X4, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770089.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||==||||||||||||||||
targets:2247   GCUGUCAUUGGGCGACCAGAA   2267

2.0 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X5, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770087.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||==||||||||||||||||
targets:2334   GCUGUCAUUGGGCGACCAGAA   2354

2.0 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X3, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770086.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||==||||||||||||||||
targets:2334   GCUGUCAUUGGGCGACCAGAA   2354

2.0 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X2, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014773483.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:1925   GCUGCCAUUGGGCGACCAGAG   1945

2.0 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X1, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_014773485.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:1518   GCUGCCAUUGGGCGACCAGAG   1538

2.0 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X3, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_014773484.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:1429   GCUGCCAUUGGGCGACCAGAG   1449

2.0 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X2, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_014763110.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:972   GCUGCCAUUGGGCGACCAGAG   992

2.0 PREDICTED: Glycine max uncharacterized LOC106794980 (LOC106794980), mRNA uncharacterized LOC106794980(LOC106794980) coding protein psRNATarget
XM_014770570.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:473   GCUGCCAUUGGGCGACCAGAG   493

2.0 PREDICTED: Glycine max uncharacterized LOC106796922 (LOC106796922), mRNA uncharacterized LOC106796922(LOC106796922) coding protein psRNATarget
XM_014777033.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||=
targets:641   GCUGCCAUUGGGCGACCAGAG   661

2.0 PREDICTED: Glycine max uncharacterized LOC106799075 (LOC106799075), mRNA uncharacterized LOC106799075(LOC106799075) coding protein psRNATarget
XM_014766878.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||||*
targets:1261   GCUGCCAUUGGGCGACCAGAU   1281

2.0 PREDICTED: Glycine max uncharacterized LOC102667238 (LOC102667238), transcript variant X1, mRNA uncharacterized LOC102667238(LOC102667238) coding protein psRNATarget
XM_014771499.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||=||||
targets:1004   GCUGCCAUUGGGCGACUAGAA   1024

2.5 PREDICTED: Glycine max uncharacterized LOC102662230 (LOC102662230), transcript variant X1, mRNA uncharacterized LOC102662230(LOC102662230) coding protein psRNATarget
XM_014771500.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||=||||
targets:1004   GCUGCCAUUGGGCGACUAGAA   1024

2.5 PREDICTED: Glycine max uncharacterized LOC102662230 (LOC102662230), transcript variant X2, mRNA uncharacterized LOC102662230(LOC102662230) coding protein psRNATarget
XM_014761988.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||*||
targets:315   GCUGCCAUUGGGCGACCAAAA   335

2.5 PREDICTED: Glycine max uncharacterized LOC106794548 (LOC106794548), transcript variant X1, mRNA uncharacterized LOC106794548(LOC106794548) coding protein psRNATarget
XM_014761990.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||||*||
targets:315   GCUGCCAUUGGGCGACCAAAA   335

2.5 PREDICTED: Glycine max uncharacterized LOC106794548 (LOC106794548), transcript variant X2, mRNA uncharacterized LOC106794548(LOC106794548) coding protein psRNATarget
XM_014768667.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=|||||||*|||||||||
targets:250   GCUGCCAUUGGACGACCAGAA   270

2.5 PREDICTED: Glycine max cytochrome P450 703A2-like (LOC102663508), mRNA cytochrome P450 703A2-like(LOC102663508) coding protein psRNATarget
XM_014763695.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |||=||||||||||||*||||
targets:386   GCUGCCAUUGGGCGACAAGAA   406

2.5 PREDICTED: Glycine max uncharacterized LOC102662629 (LOC102662629), mRNA uncharacterized LOC102662629(LOC102662629) coding protein psRNATarget
XM_014779272.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:2144   GAUGCCAUUGGGUGACCAGAA   2164

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X4, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779271.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:1122   GAUGCCAUUGGGUGACCAGAA   1142

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X3, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779270.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:1001   GAUGCCAUUGGGUGACCAGAA   1021

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X2, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779273.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:954   GAUGCCAUUGGGUGACCAGAA   974

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X5, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779274.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:1001   GAUGCCAUUGGGUGACCAGAA   1021

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X6, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779275.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  |*|=||||||||=||||||||
targets:1001   GAUGCCAUUGGGUGACCAGAA   1021

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X7, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014770985.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  *||=|||*||||||||||||=
targets:1270   UCUGCCAAUGGGCGACCAGAG   1290

3.0 PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X1, mRNA uncharacterized LOC106797154(LOC106797154) coding protein psRNATarget
XM_014770986.1
ncRNA:21   CGAUGGUAACCCGCUGGUCUU   1
  *||=|||*||||||||||||=
targets:1175   UCUGCCAAUGGGCGACCAGAG   1195

3.0 PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X2, mRNA uncharacterized LOC106797154(LOC106797154) coding protein psRNATarget
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