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BaseInfo

ncRNA ID	novel_gma_miR6535
Species	Glycine max
Class	miRNA
Genome position	Chr11:33162543-33162715 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295525;SRR1295531;SRR1292928
Length	24
Mature sequence(if miRNA)	1 - AGAAGAAAAAAGAUGAGAUGAGCU - 24
Stem-loop(if miRNA)	--          A           C        A  CA     A      CCAUG         U    AAUUC   AAUACAGUUU   AGAAGAAAAA GAUGAGAUGAG UUUUCUAU AA  AAAAU AGUUUU     AGUUAAUUU UAGA     ACU          C   |||||||||| ||||||||||| |||||||| ||  ||||| ||||||     ||||||||| ||||     |||   UCUUCUUUUU UUACUUUAUUC AAGAGGUA UU  UUUUA UCAAAA     UUAAUUAAA AUCU     AGA          U AU          -           U        A  AA     C      AAUAA         C    ACAGU   GUAGAAAAUC
Stem-loop sequence	AGAAGAAAAAAGAUGAGAUGAGCUUUUCUAUAAACAAAAAUAAGUUUUCCAUGAGUUAAUUUUUAGAAAUUCACUAAUACAGUUUCUCUAAAAGAUGAGAUGACAUCUACAAAUUAAUUAAUAAAAAACUCAUUUUAAUUAAUGGAGAAUCUUAUUUCAUUUUUUUCUUCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003541440.3	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   |*|||||||||||||||||||||| targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925 Target Full Sequence	0.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_006594197.2	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   |*|||||||||||||||||||||| targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925 Target Full Sequence	0.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_014764588.1	ncRNA:24   UCGAGUAGAG-UAGAAAAAAGAAGA   1   |*||||||||-|||||||||||||| targets:114   AUCUCAUCUCUAUCUUUUUUCUUCU   138 Target Full Sequence	2.0	PREDICTED: Glycine max ABC transporter G family member 28-like (LOC100794093), mRNA	ABC transporter G family member 28-like(LOC100794093)	coding protein	psRNATarget
XM_003537621.3	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   ***||=||||*||||||||||||| targets:96   CUAUCGUCUCUUCUUUUUUCUUCU   119 Target Full Sequence	2.0	PREDICTED: Glycine max protein S-acyltransferase 10 (LOC100818912), mRNA	protein S-acyltransferase 10(LOC100818912)	coding protein	psRNATarget
XM_003545424.3	ncRNA:21   AGUAGAGUAGAAAAAAGAAGA   1   ||*||||||=||||||||||| targets:1   UCCUCUCAUUUUUUUUCUUCU   21 Target Full Sequence	2.5	PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100789052), mRNA	SNF1-related protein kinase regulatory subunit beta-1(LOC100789052)	coding protein	psRNATarget
XM_006594618.2	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   **||||||||*||||||*|||||| targets:35   CUCUCAUCUCUUCUUUUCUCUUCU   58 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816142 (LOC100816142), transcript variant X2, mRNA	uncharacterized LOC100816142(LOC100816142)	coding protein	psRNATarget
XM_006594617.2	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   **||||||||*||||||*|||||| targets:65   CUCUCAUCUCUUCUUUUCUCUUCU   88 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816142 (LOC100816142), transcript variant X1, mRNA	uncharacterized LOC100816142(LOC100816142)	coding protein	psRNATarget
BT092969.1	ncRNA:24   UCGA-----GUAGAGUAGAAAAAAGAAGA   1   ||||-----||||||*||||*|||||||| targets:476   AGCUUCUUCCAUCUCCUCUUGUUUCUUCU   504 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-26F8 unknown mRNA	NA	coding protein	psRNATarget
XM_003519443.3	ncRNA:24   UCGAGUAGAGUAGAAAAAAGAAGA   1   *|=|=||=|=*||||||||||||| targets:75   CGUUUAUUUUUUCUUUUUUCUUCU   98 Target Full Sequence	3.0	PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100793165), mRNA	SNF1-related protein kinase regulatory subunit beta-1(LOC100793165)	coding protein	psRNATarget