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BaseInfo

ncRNA ID novel_gma_miR6521
Species Glycine max
Class miRNA
Genome position Chr7:28014908-28015019 [+]
Reference genome Glycine_max_v2.0
Source SRR1295525
Length 24
Mature sequence(if miRNA) 89 - AGCAUUCAAAGACGGUUAUUAGCU - 112
Stem-loop(if miRNA) -U   A   C            CAACGCAGACAUAACAUUCAAAGGCAGUUAUUAU
  UAA AAC GUCUUUGAAUGU                                  C
  ||| ||| ||||||||||||                                  U
  GAU UAU UGGCAGAAACUU                                  A
UC   -   -            ACGAUACAGACGCAACUGUAAGUUUCUGCCAAUA
Stem-loop sequence UUAAAAACCGUCUUUGAAUGUCAACGCAGACAUAACAUUCAAAGGCAGUUAUUAUCUAAUAACCGUCUUUGAAUGUCAACGCAGACAUAGCAUUCAAAGACGGUUAUUAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775607.1
ncRNA:24   UCGAUUAUUGGCAGAAACUUACGA   1
  |*||||||||||||||||||||=*
targets:1617   AACUAAUAACCGUCUUUGAAUGUC   1640

2.5 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_006601444.1
ncRNA:24   UCGA---UUAUUGGCAGAAACUUACGA   1
  =|=|---=|*||||||||||||||*||
targets:805   GGUUUUCGAAAACCGUCUUUGAAUACU   831

2.5 PREDICTED: Glycine max splicing factor 3B subunit 2-like (LOC102663030), mRNA splicing factor 3B subunit 2-like(LOC102663030) coding protein psRNATarget
BT094602.1
ncRNA:24   UCGAUUAUUGGCAGAAACUUACGA   1
  *|=*=|||*|=||||||||||||*
targets:481   UGUAGAUAUCUGUCUUUGAAUGCA   504

3.0 Soybean clone JCVI-FLGm-14B22 unknown mRNA NA coding protein psRNATarget