Search result

BaseInfo

ncRNA ID	novel_gma_miR6502
Species	Glycine max
Class	miRNA
Genome position	Chr4:41610095-41610241 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295525;SRR1451610;SRR1451613;SRR1451615
Length	24
Mature sequence(if miRNA)	1 - AAUAAUCGUCUUAGUAUGUAGCCU - 24
Stem-loop(if miRNA)	--    AC               U      U              UCG     --U       UCUUUCUA  A  AU   GUUG  UAUACUAAGACGGUU UUGUAA AACCGUCUUAGUAU   GUUUG   GUCUAAG        CG CG  U   ||||  ||||||||||||||| |||||| ||||||||||||||   |||||   |||||||        || ||   CGAU  GUAUGAUUCUGCUAA AACGUU UUGGUAGAAUCAUA   CAGAC   UAGAUUC        GC GC  A UC    --               U      U              ---     CUU       -UACCAAA  -  GU
Stem-loop sequence	GUUGACUAUACUAAGACGGUUUUUGUAAUAACCGUCUUAGUAUUCGGUUUGUGUCUAAGUCUUUCUACGACGAUUAUGCGCGAAACCAUCUUAGAUUUCCAGACAUACUAAGAUGGUUUUUGCAAUAAUCGUCUUAGUAUGUAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014773514.1	ncRNA:24   UCCGAUGUAUGAUUCUGCUAAUAA   1   =****||||*||||||||=||||| targets:263   GACACACAUUCUAAGACGGUUAUU   286 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA	uncharacterized LOC106798042(LOC106798042)	coding protein	psRNATarget
NM_001250702.2	ncRNA:24   UCCGAUGUAUGAUUCUGCUAAUAA   1   ||---|||||||||||||=||||* targets:1316   AG---ACAUACUAAGACGGUUAUG   1336 Target Full Sequence	2.5	Glycine max bZIP transcription factor bZIP94 (BZIP94), mRNA	bZIP transcription factor bZIP94(BZIP94)	coding protein	psRNATarget
DQ787046.1	ncRNA:24   UCCGAUGUAUGAUUCUGCUAAUAA   1   ||---|||||||||||||=||||* targets:1527   AG---ACAUACUAAGACGGUUAUG   1547 Target Full Sequence	2.5	Glycine max bZIP transcription factor bZIP94 (bZIP94) mRNA, complete cds	NA	coding protein	psRNATarget
XM_014762112.1	ncRNA:24   UCCGAUGUAUGAUUCUGCUAAUAA   1   |****|*|||||||||=||||||| targets:1689   AUUGAAAAUACUAAGAUGAUUAUU   1712 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102670532 (LOC102670532), transcript variant X1, mRNA	uncharacterized LOC102670532(LOC102670532)	coding protein	psRNATarget