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BaseInfo

ncRNA ID novel_gma_miR6500
Species Glycine max
Class miRNA
Genome position Chr3:816561-816644 [-]
Reference genome Glycine_max_v2.0
Source SRR1295525
Length 24
Mature sequence(if miRNA) 61 - GAAAGAGAGUGAACUGUAGAAGAG - 84
Stem-loop(if miRNA) --             --C            -CCC UC    CU
  GAAAGAGAGUGAA   UGUAGAAGAGAG    G  GAUU  U
  |||||||||||||   ||||||||||||    |  ||||  C
  CUUUUUUUUACUU   GUAUUUUUUUUC    C  CUGA  U
GC             UUU            CUUU UU    UU
Stem-loop sequence GAAAGAGAGUGAACUGUAGAAGAGAGCCCGUCGAUUCUUCUUUAGUCUUCUUUCCUUUUUUUUAUGUUUUUCAUUUUUUUUCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003524845.3
ncRNA:24   GAG-AAGAUGUCAAGUGAGAGAAAG   1
  *||-|||||||||||||||*||||*
targets:1825   GUCAUUCUACAGUUCACUCACUUUA   1849

2.5 PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100797646), transcript variant X1, mRNA probable arabinosyltransferase ARAD1(LOC100797646) coding protein psRNATarget
XM_003523501.3
ncRNA:24   GAGAAGAUGUCAAGUGAGAGAAAG   1
  |**|||||||*||||||*||||||
targets:145   CAAUUCUACACUUCACUAUCUUUC   168

2.5 PREDICTED: Glycine max peptidyl-prolyl cis-trans isomerase FKBP53-like (LOC100781174), mRNA peptidyl-prolyl cis-trans isomerase FKBP53-like(LOC100781174) coding protein psRNATarget