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BaseInfo

ncRNA ID novel_gma_miR6498
Species Glycine max
Class miRNA
Genome position Chr2:38286509-38286629 [-]
Reference genome Glycine_max_v2.0
Source SRR1295525
Length 24
Mature sequence(if miRNA) 1 - AAUGAGAUACAUUCUAAGACGGUC - 24
Stem-loop(if miRNA) --  A  G          AA             -GU    ACCC                AU
  CC UC UAGAAUGUAU  CAUUCUAAGACGG   UCCU    AGGACCGUCUUAGAAU  A
  || || ||||||||||  |||||||||||||   ||||    ||||||||||||||||  C
  GG AG AUCUUACAUA  GUAAGAUUCUGCU   AGGA    UUCUGGCAGAAUCUUA  C
CU  C  A          GA             AAC    ---A                CA
Stem-loop sequence CCAUCGUAGAAUGUAUAACAUUCUAAGACGGGUUCCUACCCAGGACCGUCUUAGAAUAUACCACAUUCUAAGACGGUCUUAAGGACAAUCGUCUUAGAAUGAGAUACAUUCUAAGACGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006592577.2
ncRNA:24   CUGGCAGAAUCUUACAUAGAGUAA   1
  ***=||*|||||||||||||*|||
targets:2697   UUAUGUAUUAGAAUGUAUCUGAUU   2720

2.5 PREDICTED: Glycine max 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like (LOC100791297), transcript variant X6, mRNA 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like(LOC100791297) coding protein psRNATarget