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BaseInfo

ncRNA ID	novel_gma_miR6490
Species	Glycine max
Class	miRNA
Genome position	Chr1:51534309-51534481 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295525
Length	24
Mature sequence(if miRNA)	1 - AGAAGAAAAAAGAUGAGAUGAACU - 24
Stem-loop(if miRNA)	--          A          AC        AAACA        CUCUC   G         U    A C   -  A    AAUUU   AGAAGAAAAA GAUGAGAUGA  UUUUCCAU     AAAAUAAG     CAU AGUUAAUUU UAGA G UCA CU AUCU     C   |||||||||| ||||||||||  ||||||||     ||||||||     ||| ||||||||| |||| | ||| || ||||   UCUUUUUUUU UUAUUUUACU  AAGAGGUA     UUUUAUUU     GUA UUAAUUAAA AUCU C AGU GA UAGA     U AU          -          CA        AUCAA        AAAAA   A         C    A -   A  A    AAAUU
Stem-loop sequence	AGAAGAAAAAAGAUGAGAUGAACUUUUCCAUAAACAAAAAUAAGCUCUCCAUGAGUUAAUUUUUAGAAGCUCACUAAUCUAAUUUCUUUAAAAGAUAAGAUGACAUCUACAAAUUAAUUAAUGAAAAAUUUAUUUUAACUAAUGGAGAAACUCAUUUUAUUUUUUUUUUCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003541440.3	ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1   |**||||||||||||||||||||| targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925 Target Full Sequence	0.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_006594197.2	ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1   |**||||||||||||||||||||| targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925 Target Full Sequence	0.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_014764588.1	ncRNA:24   UCAAGUAGAG-UAGAAAAAAGAAGA   1   |**|||||||-|||||||||||||| targets:114   AUCUCAUCUCUAUCUUUUUUCUUCU   138 Target Full Sequence	2.0	PREDICTED: Glycine max ABC transporter G family member 28-like (LOC100794093), mRNA	ABC transporter G family member 28-like(LOC100794093)	coding protein	psRNATarget
XM_003537621.3	ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1   ***||=||||*||||||||||||| targets:96   CUAUCGUCUCUUCUUUUUUCUUCU   119 Target Full Sequence	2.0	PREDICTED: Glycine max protein S-acyltransferase 10 (LOC100818912), mRNA	protein S-acyltransferase 10(LOC100818912)	coding protein	psRNATarget
XM_003545424.3	ncRNA:21   AGUAGAGUAGAAAAAAGAAGA   1   ||*||||||=||||||||||| targets:1   UCCUCUCAUUUUUUUUCUUCU   21 Target Full Sequence	2.5	PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100789052), mRNA	SNF1-related protein kinase regulatory subunit beta-1(LOC100789052)	coding protein	psRNATarget
XM_003519443.3	ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1   *|||=||=|=*||||||||||||| targets:75   CGUUUAUUUUUUCUUUUUUCUUCU   98 Target Full Sequence	3.0	PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100793165), mRNA	SNF1-related protein kinase regulatory subunit beta-1(LOC100793165)	coding protein	psRNATarget