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BaseInfo

ncRNA ID ath-miR868-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:6488234-6488426 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 54 - UCAUGUCGUAAUAGUAGUCAC - 74
Stem-loop(if miRNA)    -U                      U  A     ----AU    AGCUAU       C            U    A     G           GAG
GAA  AAGCAUUGUCGGCACUUGAGAA GU AAGUG      GAUC      CGUAUUU AUGUCGUAAUAG AGUC CGUUA GGUGAUAUAAC   G
|||  |||||||||||||||||||||| || |||||      ||||      ||||||| |||||||||||| |||| ||||| |||||||||||   C
CUU  UUCGUAAUAGUCGUGAAUUCUU CA UUCAC      UUAG      GCAUAAA UACAGUAUUAUC UUAG GUGAU CUACUAUAUUG   G
   UC                      C  G     AAAAUU    -GUUUU       A            U    C     A           AGA
Stem-loop sequence GAAUAAGCAUUGUCGGCACUUGAGAAUGUAAAGUGAUGAUCAGCUAUCGUAUUUCAUGUCGUAAUAGUAGUCACGUUAGGGUGAUAUAACGAGGCGAGAGUUAUAUCAUCAUAGUGCGAUUUCUAUUAUGACAUAAAAUACGUUUUGGAUUUUAAAACACUUGACCUUCUUAAGUGCUGAUAAUGCUUCUUUC

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
2 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).