ncRNA ID | ath-miR868-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:6488234-6488426 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 54 - UCAUGUCGUAAUAGUAGUCAC - 74 |
Stem-loop(if miRNA) |
   -U                      U  A     ----AU    AGCUAU       C            U    A     G           GAG GAA  AAGCAUUGUCGGCACUUGAGAA GU AAGUG      GAUC      CGUAUUU AUGUCGUAAUAG AGUC CGUUA GGUGAUAUAAC   G |||  |||||||||||||||||||||| || |||||      ||||      ||||||| |||||||||||| |||| ||||| |||||||||||   C CUU  UUCGUAAUAGUCGUGAAUUCUU CA UUCAC      UUAG      GCAUAAA UACAGUAUUAUC UUAG GUGAU CUACUAUAUUG   G    UC                      C  G     AAAAUU    -GUUUU       A            U    C     A           AGA |
Stem-loop sequence | GAAUAAGCAUUGUCGGCACUUGAGAAUGUAAAGUGAUGAUCAGCUAUCGUAUUUCAUGUCGUAAUAGUAGUCACGUUAGGGUGAUAUAACGAGGCGAGAGUUAUAUCAUCAUAGUGCGAUUUCUAUUAUGACAUAAAAUACGUUUUGGAUUUUAAAACACUUGACCUUCUUAAGUGCUGAUAAUGCUUCUUUC |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
2 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |