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BaseInfo

ncRNA ID novel_gma_miR6449
Species Glycine max
Class miRNA
Genome position Chr18:27651277-27651346 [+]
Reference genome Glycine_max_v2.0
Source SRR1295524;SRR1451607;SRR1451609
Length 24
Mature sequence(if miRNA) 47 - AAAUUCCGGAACCAUGUAGAGUUU - 70
Stem-loop(if miRNA) --   A      C   A  --U      UUGUUGU   UA
  ACU UUACGU GGU CU   GUUUCA       CAA  A
  ||| |||||| ||| ||   ||||||       |||
  UGA GAUGUA CCA GG   UAAAGU       GUU  U
UU   -      -   A  CCU      ------U   UG
Stem-loop sequence ACUAUUACGUCGGUACUUGUUUCAUUGUUGUCAAUAAUGUUUGUUGAAAUUCCGGAACCAUGUAGAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT096662.1
ncRNA:24   UUUGAGAUGUACCAAGGCCUUAAA   1
  *=||**||=||||||||||||||*
targets:677   UGACCAUAUAUGGUUCCGGAAUUA   700

3.0 Soybean clone JCVI-FLGm-21A21 unknown mRNA NA coding protein psRNATarget
NM_001255724.1
ncRNA:24   UUUGAGAUGUACCAAGGCCUUAAA   1
  *=||**||=||||||||||||||*
targets:677   UGACCAUAUAUGGUUCCGGAAUUA   700

3.0 Glycine max ribosome biogenesis protein BRX1-like (LOC100797887), mRNA ribosome biogenesis protein BRX1-like(LOC100797887) coding protein psRNATarget
XM_003552577.3
ncRNA:24   UUUGAGAUGUACCAAGGCCUUAAA   1
  *=||**||=||||||||||||||*
targets:749   UGACCAUAUAUGGUUCCGGAAUUA   772

3.0 PREDICTED: Glycine max ribosome biogenesis protein BRX1-like (LOC100797218), mRNA ribosome biogenesis protein BRX1-like(LOC100797218) coding protein psRNATarget