ncRNA ID | novel_gma_miR6449 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:27651277-27651346 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1295524;SRR1451607;SRR1451609 |
Length | 24 |
Mature sequence(if miRNA) | 47 - AAAUUCCGGAACCAUGUAGAGUUU - 70 |
Stem-loop(if miRNA) |
--   A      C   A  --U      UUGUUGU   UA   ACU UUACGU GGU CU   GUUUCA       CAA  A   ||| |||||| ||| ||   ||||||       |||   UGA GAUGUA CCA GG   UAAAGU       GUU  U UU   -      -   A  CCU      ------U   UG |
Stem-loop sequence | ACUAUUACGUCGGUACUUGUUUCAUUGUUGUCAAUAAUGUUUGUUGAAAUUCCGGAACCAUGUAGAGUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT096662.1 |
|
3.0 | Soybean clone JCVI-FLGm-21A21 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
NM_001255724.1 |
|
3.0 | Glycine max ribosome biogenesis protein BRX1-like (LOC100797887), mRNA | ribosome biogenesis protein BRX1-like(LOC100797887) | coding protein | psRNATarget | |||||||||
XM_003552577.3 |
|
3.0 | PREDICTED: Glycine max ribosome biogenesis protein BRX1-like (LOC100797218), mRNA | ribosome biogenesis protein BRX1-like(LOC100797218) | coding protein | psRNATarget |