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BaseInfo

ncRNA ID novel_gma_miR6444
Species Glycine max
Class miRNA
Genome position Chr18:10369403-10369544 [+]
Reference genome Glycine_max_v2.0
Source SRR1295524
Length 24
Mature sequence(if miRNA) 119 - AGGAGGAACAUGCACGGAUUGGUG - 142
Stem-loop(if miRNA) --           UUC      G        G                  A     U              
  CCAAUCUGUGC   UUCCUC UCUACCAG UCAAUAUCUUUCCUUUCA CUUUU UUUUUGUAAAUUACA
  |||||||||||   |||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||G
  GGUUAGGCACG   AAGGAG AGAUGGUC AGUUAUAGAAAGGAAAGU GGAAA GAAAACAUUUGAUGU
GU           UAC      G        G                  -     C              
Stem-loop sequence CCAAUCUGUGCUUCUUCCUCGUCUACCAGGUCAAUAUCUUUCCUUUCAACUUUUUUUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAAGGAAAGAUAUUGAGCUGGUAGAGGAGGAACAUGCACGGAUUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT090376.1
ncRNA:24   GUGGUUAGGCACGUACAAGGAGGA   1
  =|===||||*|||||||||||*||
targets:214   UAUUGAUCCUUGCAUGUUCCUACU   237

2.5 Soybean clone JCVI-FLGm-4G12 unknown mRNA NA coding protein psRNATarget
NM_001250154.1
ncRNA:24   GUGGUUAGGCACGUACAAGGAGGA   1
  =|===||||*|||||||||||*||
targets:214   UAUUGAUCCUUGCAUGUUCCUACU   237

2.5 Glycine max uncharacterized LOC100306327 (LOC100306327), mRNA uncharacterized LOC100306327(LOC100306327) coding protein psRNATarget